View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_high_9 (Length: 392)
Name: NF18503_high_9
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 34181242 - 34180870
Alignment:
| Q |
16 |
aacagaacacattcttccaagtatcggtcattaatgagcgattctcannnnnnnnnnn---aaataatcttgttgacgaatagaaaaataactaattatt |
112 |
Q |
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| T |
34181242 |
aacagaacacattcttccaagtatcgatcattaatgagcgattctcatattttttttttttaaataatcttgttgacgaatagaaaaataactaattatt |
34181143 |
T |
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| Q |
113 |
ttttattaatttttcatacgaagcatttgctgtattctggagagattgtttcatgtaacgacaaacaaacaaaaggatcaatatttattatttagatggg |
212 |
Q |
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| T |
34181142 |
ttttattaatttttcatacgaagcatttgctgtattctggagagattgtttcatgtaacgacaaacaaacaaaaggatcaatatttattatttagatggg |
34181043 |
T |
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| Q |
213 |
tttgtcaattggttctgttgcttttttactaaaataatgactaaataatgaataaatacaatgattattgctagaaacagtttcattgattgtggaatca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34181042 |
tttgtcaattggttctgttgcttttttactaaaataatgactaaataatgaataaatacaatgattattgctagaaacagtttcattgattgtggaatca |
34180943 |
T |
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| Q |
313 |
acttctgatattttcatcggcgtagcaatatcgtgaggagcaaatgtagaagtacttttttgtttgatatatt |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34180942 |
acttctgatattttcatcggcgtagcaatatcgtgaggagcaaatgtagaagtatttttttgtttgatatatt |
34180870 |
T |
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