View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18503_low_1 (Length: 918)
Name: NF18503_low_1
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 16 - 665
Target Start/End: Complemental strand, 31981186 - 31980538
Alignment:
| Q |
16 |
aaaatactatcgtaagcgccaacagtcagccagccaccctccctcctacctagctaaacaatcccgaggattctaacaccacagatagaacaaacatgag |
115 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31981186 |
aaaaaactatcgtaagtgccaatagtcagccagccaccctccctcctacctagctaaacaatcccgaggattctaacaccacacatagaacaaacatgag |
31981087 |
T |
|
| Q |
116 |
gcaattgctaaccaactcgtgctcaaataccacgaaagcaccaaaatattatgcaccaattcatctacctcatcactccattattgaaaatattatcatt |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31981086 |
gcaattgctaaccaactcatgctcaaataccacgaaagcaccaaaatattatgcaccaattcatctacctcatcactccattattgaaaatattatcatt |
31980987 |
T |
|
| Q |
216 |
cctccacttccaaattacccaaatcatagcatttcaaattaaccaaaaaccatgtcttagtttcttcgaggtcgcctaatttgaccaacaacccaaatgt |
315 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31980986 |
cctccccttccaaattacccaaatcatagcatttcaaattaaccaaaaaccatgtcttagtttcttcgaggtcgcttaatttgaccaacaacccaaatgt |
31980887 |
T |
|
| Q |
316 |
acatagagattatgatggacattagttatgttctcatactatttgtgtgtgtaaaaaggtcagcatgactacttataatactagctcctatataatgggc |
415 |
Q |
| |
|
||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31980886 |
acatagagattatgaaggccatcagttatgttctcatactatttgtgtgtgtaaaaaggttagcatgactacttataatactaactcctatataatgggc |
31980787 |
T |
|
| Q |
416 |
gggaacaaattcataatcatcatttctatgtaatgaaaacttgctgctacacaaataagctagtttatgaattaagctaatttgtcatgagaatttttca |
515 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
31980786 |
gggcacaaattcataatcatcatttctatgtaatgaaaacttgctgctacacaaataagctagtttttgaattaagctaatttgacatgagaa-ttttca |
31980688 |
T |
|
| Q |
516 |
ttaaaacataattttctcatactaatcacaatacacattgatctcacataaatatttcaagcctaaataattaaattcaagcctaggagagagagagcca |
615 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
31980687 |
ttaaaacctaattttctcatactaatcacaatacacattgatctcacataaatatttcaagccaaactaattaaattcaagcctaggagagagagagcca |
31980588 |
T |
|
| Q |
616 |
acctcaatcatttacgaactcataagaattcaatgaactttgatgctttt |
665 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31980587 |
acctcaatcgtttacgaacgcataagaattcaatgaactttgatgctttt |
31980538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 616 - 902
Target Start/End: Complemental strand, 31979507 - 31979223
Alignment:
| Q |
616 |
acctcaatcatttacgaactcataagaattcaatgaactttgatgcttttcaagttttccccaattccacaatcacgtaacatttagctccaaactcact |
715 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
31979507 |
acctcaatcgttttcgaactcataagaattcaatgaactttgatgcttttcaagttttccccaattccacaatcacttgacatttagctccaaactcact |
31979408 |
T |
|
| Q |
716 |
tccatttgaatttgatgcttccaactactccaataaggttattgctaactaaaatcaacatatgtaacaacacaacaacaaaaaggttaaatcaattagg |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31979407 |
tccatttgaatttgatgcttccaactactccaataaggttattgctaact-aaatcaacacat-taacaacacaacaacaaaaaggttaaatcaattagg |
31979310 |
T |
|
| Q |
816 |
gtttcaattatcattctatagcatgtaaatatccttttgctatgataagaacctaatatgagaaactcacctcaattagtatatatc |
902 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31979309 |
gtttcaattatcattctattgcatgtaaatatccttttgctatgattagaacctaatatgagaaactcacatcaattagtatatatc |
31979223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 766 - 823
Target Start/End: Complemental strand, 52629037 - 52628980
Alignment:
| Q |
766 |
aaaatcaacatatgtaacaacacaacaacaaaaaggttaaatcaattagggtttcaat |
823 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||||| ||||||| |||| ||||||| |
|
|
| T |
52629037 |
aaaatccacacatgtaacaacacaataacaaaaagggaaaatcaactaggttttcaat |
52628980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 671 - 902
Target Start/End: Original strand, 27409283 - 27409513
Alignment:
| Q |
671 |
tttccccaattccacaatcacgtaacatttagctccaaactcacttccatttgaatttgatgcttccaactactccaataaggttattgctaactaaaat |
770 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27409283 |
tttccccaattccacaatcacttgacatttagctccaaactcacttccatttgaatttgatgcttccaactactccaataaggttattgctaactaaaat |
27409382 |
T |
|
| Q |
771 |
caacatatgtaacaacacaacaacaaaaaggttaaatcaattagggtttcaattatcattctatagcatgtaaatatccttttgctatgataagaaccta |
870 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
27409383 |
caacacat-taacaacacaacaacaaaaaggttaaatcaattagggtttcaattatcattctattgcatgtaaatatccttttgctatgattagaaccta |
27409481 |
T |
|
| Q |
871 |
atatgagaaactcacctcaattagtatatatc |
902 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27409482 |
atatgagaaactcacctcaattagtatatatc |
27409513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 780 - 835
Target Start/End: Complemental strand, 40927970 - 40927915
Alignment:
| Q |
780 |
taacaacacaacaacaaaaaggttaaatcaattagggtttcaattatcattctata |
835 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
40927970 |
taacaacacaaaaacaaaaagggaaaatcaattagggtttcaattctcattctata |
40927915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 511 - 567
Target Start/End: Original strand, 35091672 - 35091728
Alignment:
| Q |
511 |
tttcattaaaacataattttctcatactaatcacaatacacattgatctcacataaa |
567 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
35091672 |
tttcattaaaacttaattttctcatactaatcacaatacccattaatctaacataaa |
35091728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 896
Target Start/End: Original strand, 35091903 - 35091936
Alignment:
| Q |
863 |
agaacctaatatgagaaactcacctcaattagta |
896 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
35091903 |
agaacctaatttgagaaactcacctcaattagta |
35091936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 777 - 840
Target Start/End: Original strand, 7649827 - 7649890
Alignment:
| Q |
777 |
atgtaacaacacaacaacaaaaaggttaaatcaattagggtttcaattatcattctatagcatg |
840 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7649827 |
atgtaagaacacaacaacaaaaaggaaaaatcaatcggggtttcaattatcattctattgcatg |
7649890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 32090883 - 32090825
Alignment:
| Q |
454 |
acttgctgctacacaaataagctagtttatgaattaagctaatttgtcatgagaatttt |
512 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| |
|
|
| T |
32090883 |
acttgctgctacacaaataagttaattaatgaattaagctaatttaacatgagaatttt |
32090825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 848 - 897
Target Start/End: Complemental strand, 32090687 - 32090638
Alignment:
| Q |
848 |
ccttttgctatgataagaacctaatatgagaaactcacctcaattagtat |
897 |
Q |
| |
|
||||||||||| || |||||||||| ||||||| |||||||||||||||| |
|
|
| T |
32090687 |
ccttttgctataattagaacctaatttgagaaaatcacctcaattagtat |
32090638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 780 - 841
Target Start/End: Original strand, 48505870 - 48505931
Alignment:
| Q |
780 |
taacaacacaacaacaaaaaggttaaatcaattagggtttcaattatcattctatagcatgt |
841 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
48505870 |
taacaacacaaaaacaaaatgggaaaatcaattagggtttcaattctcattctattgcatgt |
48505931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 780 - 825
Target Start/End: Original strand, 48505807 - 48505852
Alignment:
| Q |
780 |
taacaacacaacaacaaaaaggttaaatcaattagggtttcaatta |
825 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
48505807 |
taacaacacaaaaacaaaaagggaaaatcaattagggtttcaatta |
48505852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University