View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_11 (Length: 433)
Name: NF18503_low_11
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 3583676 - 3584085
Alignment:
| Q |
10 |
aagaatatggtctgatggcaatcattactccaggtaactatttcgagtcgcaaaggcctgatgcttcatcacagaaaccatcccggtctagtagtttctg |
109 |
Q |
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| T |
3583676 |
aagaatatggtctgatggcaatcattactccaggtaactatttcgagtcgcaaaggcctgatgcttcatcacagaaaccatcccggtctagtagtttctg |
3583775 |
T |
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| Q |
110 |
tggtggagcactcaacaatggagatgatggggtgccataagcatttcgtcgtttgtttccgcaacctaaactcactcttgtgcttactcctgttacagga |
209 |
Q |
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| T |
3583776 |
tggtggagcactcaacaatggagatgatggggtgccataagcatttcgtcgtttgtttccgcaacctaaactcactcttgtgcttactcctgttacagga |
3583875 |
T |
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| Q |
210 |
tttgtgccactagcatacttgcataaagcctacataatcagtcaaataatatatgtaattctcagtcataagctcaataaattctacgccaagaaagcat |
309 |
Q |
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| T |
3583876 |
tttgtgccactagcatacttgcataaagcctacataatcagtcaaataatatatgtaattctcagtcataagctcaataaattctacgccaagaaagcat |
3583975 |
T |
|
| Q |
310 |
tttgaccacattgaaacac----attctacgcaatcagaccatgaccctatcatgtggaagctcgaatactaagatttgattagtgtttgaagcaatcag |
405 |
Q |
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| T |
3583976 |
tttgaccacattgaaacacattaattctacgcaatctgaccatgaccctatcatgtggaagctcgaatactaagatttgattagtgtttgaagcaatcag |
3584075 |
T |
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| Q |
406 |
tggtcgtacc |
415 |
Q |
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| T |
3584076 |
tggtcgtacc |
3584085 |
T |
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