View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_13 (Length: 375)
Name: NF18503_low_13
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 4721317 - 4721684
Alignment:
| Q |
10 |
catcatcaccagagaaccaccagcatgtttcttcaatcttcaacgaacaaatcaaaagtaaatgtcgaataataaaatggcacaacatgagaagatccag |
109 |
Q |
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| T |
4721317 |
catcctcaccagagaaccaccagcatgtttcttcaatcttcaactaacaaatcaaaagtaaatgtcgaataataaaatggcacaacatgagaagatccag |
4721416 |
T |
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| Q |
110 |
attaaagagtatgcaccatgacgacaaatggaatatcatggcgataacccaacataaccacctaccaaattcaacatatatacaaatacgcacggacaag |
209 |
Q |
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| T |
4721417 |
attaaagagtatgcaccatgacgacaaatggaatatcatggcgataacccaacataaacacctaccatattcaacatatatacaaatacgcacagacaag |
4721516 |
T |
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| Q |
210 |
caaaacagataggcatcttctctgctaaaaggaacgtatgaattaccaaaatctaagataaggtattagtatcaaagtcgatataatga--tcaattaca |
307 |
Q |
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| T |
4721517 |
caaaacagataggcatcttctctgctaaaaggaatgtatgaattaccaaaatctaagataaggtattagtatcaaagtcgatgtagtgatgtcaattaca |
4721616 |
T |
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| Q |
308 |
aaatattaacattagatatgatgtattcatatagataaggaattatgatcaaagcattcttcacgata |
375 |
Q |
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| T |
4721617 |
aaatattaacattagatatgatgtattcatctagataaggaattatgatcaaagcattcttcacgata |
4721684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 364
Target Start/End: Original strand, 54923478 - 54923641
Alignment:
| Q |
206 |
caagcaaaacagataggcatcttctctgctaaaaggaacgtatgaat---taccaaaatctaagataaggtattagtatcaaagtcgatataatga--tc |
300 |
Q |
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| T |
54923478 |
caagcaaaacagataggtatcttctctgctaaaaggaaaatatgaattactaccaaaatcttagataaggaattggtatcaaagccgatgttatgatgtc |
54923577 |
T |
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| Q |
301 |
aattacaaaatattaacattagatatgatgtattcatatagataaggaattatgatcaaagcat |
364 |
Q |
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| T |
54923578 |
tattaccatatattaacattagctacaatatattcatttatataaggaattaatatcaaagcat |
54923641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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