View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_14 (Length: 369)
Name: NF18503_low_14
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 708869 - 708518
Alignment:
| Q |
1 |
catttccattatcatctttaccaacaccagaaacaccaccgccatttccaaatacacctacaccaccccattgctgacctaaaccaacagccctattcct |
100 |
Q |
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| T |
708869 |
catttccatgatcatctttaccaacaccagaaacaccaccaccatttccaaatacacctacaccaccccattgctgacctaaaccaacagccctattcct |
708770 |
T |
|
| Q |
101 |
atcctcaacaaacccaccaacaaattcaactccatcacccaaaaactgacctaaattcccactggcttgctcaaacctcccaccttgttgaccatcccct |
200 |
Q |
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| T |
708769 |
atcctcaacaaacccaccaacaaattcaactccatcacccaaaaactgacctaaattcccactggcttgctcaaacctcccaccttgttgaccatcccct |
708670 |
T |
|
| Q |
201 |
tgttgccaaagattaaacctttcacggccaataccagcattaacaccaccattcacttcaacatcaccaaaaaccccttcaaatccctcaacaacaccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
708669 |
tgttgccaaagattaaacctttcacggccaataccagcattaacaccaccattcacttcaacatcaccaaaaacccctccaaatccctcaacaacaccat |
708570 |
T |
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| Q |
301 |
gatcatcaccaccaaacaaccctttacctccattatcatgatcatcaacaac |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
708569 |
gatcatcaccaccaaacaaccctttacctccattatcatgatcatcaacaac |
708518 |
T |
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