View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_17 (Length: 317)
Name: NF18503_low_17
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 40033597 - 40033790
Alignment:
| Q |
15 |
caaagggcaattccgtcaaaataaagaaaaacgacgctgcaccatataaatcatgtaaccctgtttattctctcaccatttcattttctctaccggttct |
114 |
Q |
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| T |
40033597 |
caaagggcaattccgtcaaaataaagaaaaacgacgctgcaccatataaatcatgtaaccctgtttattctctcaccatttcattttctcta-------- |
40033688 |
T |
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| Q |
115 |
agggtttctgagtaacttcattcaaggtaaatttctttcgcacaatttagggtacaatttcatttctatttgatgtgttcttatcatttaggatagttag |
214 |
Q |
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| T |
40033689 |
-gggtttctgagtaacttcattcaaggtaaatttctttctcacaatttagggtacaatttcgtttctatttgatgtgttcttatcatttaggatagttag |
40033787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 40033834 - 40033874
Alignment:
| Q |
255 |
cgtattcgatcatgataataatgtttatgcttaagtttatg |
295 |
Q |
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| T |
40033834 |
cgtattcgatcatgataataatgtttatgcttaagtttatg |
40033874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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