View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_2 (Length: 716)
Name: NF18503_low_2
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 3175057 - 3175451
Alignment:
| Q |
17 |
actagtaataatactccgccgtagttaagaaaatgcaatactcagcactcacttagtaaagttcatgtgaaatttattagaaaaatgacatat--taaca |
114 |
Q |
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| T |
3175057 |
actagtaataatactccgccgcagttaagaaaatgcaatactcagcactcacttagtaaagttcatgtgaaatttattagaaaaatgacatatgttaaca |
3175156 |
T |
|
| Q |
115 |
tatacacattgaatcacaaccattgatattttcctcnnnnnnn-gcagcatcatatcaagggtaattatgtacaataatggtgaaatataatacctattc |
213 |
Q |
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| T |
3175157 |
tatacacattgaatcacaaccattgatattttcctcttttttttgcagcatcatatcaagggtaattatgtacaataatggtgaaatataatacatattc |
3175256 |
T |
|
| Q |
214 |
aaggcattaaattttgttaaacaactttatcaaagagaactttggcaatatgaaagttgatggtcctagaatcacagaaagctgcatagtaaaaactctt |
313 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3175257 |
aaggcattaaatttgattaaacaactttatcaaacagaactttggcaatatgaaagttgatggttctagaatcacagaaagctgcatagtaaaaactctt |
3175356 |
T |
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| Q |
314 |
tgcaactgtgaagaaagtattcttgatattgaaatcaatgtcacttgaagattgttggaacaccaattctacaagttcttgcatttttgactctg |
408 |
Q |
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| T |
3175357 |
tgcaactgtgaaaaaagtattcttgatattgaaatcaatgtcatttggagattgttggaacaccaattctacaagttcttgcatttttgactctg |
3175451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 237 - 475
Target Start/End: Complemental strand, 3236737 - 3236499
Alignment:
| Q |
237 |
actttatcaaagagaactttggcaatatgaaagttgatggtcctagaatcacagaaagctgcatagtaaaaactctttgcaactgtgaagaaagtattct |
336 |
Q |
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| T |
3236737 |
actttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaagctgcatagtaaaaactccttgcaactgtaaagaaagtattct |
3236638 |
T |
|
| Q |
337 |
tgatattgaaatcaatgtcacttgaagattgttggaacaccaattctacaagttcttgcatttttgactctgtctctgaattggtgattttttcatgtgt |
436 |
Q |
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|||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3236637 |
tgatattgaaatcaatatcatttggagatttttggaacaccaattctacaagttcttgcatttttgactctgtctctgaattggtgattttttcatgtgt |
3236538 |
T |
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| Q |
437 |
attgctgctgctactcttaacctggtaattgttatccac |
475 |
Q |
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| T |
3236537 |
attgctgctgctactcttaacctggtaattgttatccac |
3236499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 237 - 473
Target Start/End: Complemental strand, 3219037 - 3218801
Alignment:
| Q |
237 |
actttatcaaagagaactttggcaatatgaaagttgatggtcctagaatcacagaaagctgcatagtaaaaactctttgcaactgtgaagaaagtattct |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
3219037 |
actttatcaaagagaactttggcaatatgaaagttgatggtctttgaatcacagaaagctgcatagtaaaaactccttgcaactgtaaagaaagtattct |
3218938 |
T |
|
| Q |
337 |
tgatattgaaatcaatgtcacttgaagattgttggaacaccaattctacaagttcttgcatttttgactctgtctctgaattggtgattttttcatgtgt |
436 |
Q |
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|||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3218937 |
tgatattgaaatcaatatcatttggagatttttggaacaccaattctacaagttcttgcatttttgactctgtctctgaattggtgattttttcatgtgt |
3218838 |
T |
|
| Q |
437 |
attgctgctgctactcttaacctggtaattgttatcc |
473 |
Q |
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| T |
3218837 |
attgctgctgctactcttaacctggtaattgttatcc |
3218801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 3218771 - 3218558
Alignment:
| Q |
500 |
gtataccaaactaatcaacaaatgatatactaccatggtccatcctagttgagtttactttactaaattagttcataaatcatatctatgtaannnnnnn |
599 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3218771 |
gtatatcaaactaatcaacaaatgatatactaccatggtccatcctagttgagtttactttactaaattagttcataaatcatatctatgtaatttttta |
3218672 |
T |
|
| Q |
600 |
nnnnnnnnaggtagaacatctatttatacattagcatatgcttctttgatttgtttatatatgtacaagtggggaagttaaaaagaatgcattcagagca |
699 |
Q |
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| T |
3218671 |
tttgttttaggtagaacatctatttatacattagcatatgcttctttgatttgtttatacatgtacaagtggggaagttaaaaaaaatgcattaagagca |
3218572 |
T |
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| Q |
700 |
tgcaatgaataaaa |
713 |
Q |
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| T |
3218571 |
tgcaatgagtaaaa |
3218558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 622 - 715
Target Start/End: Complemental strand, 3236401 - 3236305
Alignment:
| Q |
622 |
tttatacattagcatatgcttctttgatttgtttatatatgtacaagtggggaagtta---aaaagaatgcattcagagcatgcaatgaataaaaaa |
715 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3236401 |
tttatacattagcatatgcttctttcatttgtttatatatgtacaagtggggaagttaattaaaagaatgcattcagagcatgcaatgaataaaaaa |
3236305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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