View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18503_low_20 (Length: 303)
Name: NF18503_low_20
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 54572344 - 54572064
Alignment:
| Q |
1 |
agcagggattcagtgtttaaaagttgttgttgattcaactaaagaatgttggctttggcactcaagatttgttcactttgagttttaggagcatgaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54572344 |
agcagggattcagtgtttaaaagttgttgttgattcaactaaagaatgttggctttggcactcaagatttgttcactttgagttttaggagcatgaatca |
54572245 |
T |
|
| Q |
101 |
actttcttctgataagttggtttctcaagaatgttgtggtggaatctaactgttagaacttaattagaaccgaaaacaaaagtgccacaacttgaaacaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54572244 |
actttcttctaataagttggtttctcaagaatgttgtggtggaatctaactgt---aacttaattagaaccgaaaacaaaagtgccacaacttgaaacaa |
54572148 |
T |
|
| Q |
201 |
tttactcattttctggaggatgaccaaaagttgtgtgaagacatgtaggccaaatgctaaagttgataacgttgatgatgaatc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54572147 |
tttactcattttctggaggatgaccaaaagttgtgtgaagacatgtaggccaaatgcttaagttgataacgttgatgatgaatc |
54572064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 54576863 - 54576608
Alignment:
| Q |
7 |
gattcagtgtttaaaagttgttgttgattcaactaaagaatgttggctttggcactcaagatttgttcactttgagttttaggagcatgaatcaactttc |
106 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
54576863 |
gattcagtgtttgaaagttgttg---attcaactaaagaatgttggctttggcactcaagatttgttcattttgagttttaggagcatgaatcaactttc |
54576767 |
T |
|
| Q |
107 |
ttctgataagttggtttctcaagaatgttgtggtggaatctaactgttagaacttaattagaaccgaaaacaaaagtgccacaacttgaaacaatttact |
206 |
Q |
| |
|
|| ||| ||||||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
54576766 |
ttatgagaagttggtttctcaaaaatgttgcggtggaatctaact-----------attagaactgaaaacaaaagtgcaacaacctgaaacaa-ttact |
54576679 |
T |
|
| Q |
207 |
cattttctggaggatgaccaaaagttgtgtgaagacatgtaggccaaatgctaaagttgataacgttgatga |
278 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||| ||| ||||||| || |||||||||| |||||||| |
|
|
| T |
54576678 |
cattttttggaggatgagcaaaag-tgtgtgaagacaggtatgccaaatacttaagttgataaagttgatga |
54576608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 54567210 - 54567099
Alignment:
| Q |
172 |
gaaaacaaaagtgccacaacttgaaacaatttactcattttctggaggatgaccaaaagttgtgtgaagacatgtaggccaaatgctaaagttgataacg |
271 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||| |
|
|
| T |
54567210 |
gaaaacaaaagtgcaacaacttgaaacaatt-actcattttctggaggatgaccaaaagttgtgtgaagacttgtatgccaaatactaaaaccgataacg |
54567112 |
T |
|
| Q |
272 |
ttgatgatgaatc |
284 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
54567111 |
ttggtgatgaatc |
54567099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University