View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_26 (Length: 276)
Name: NF18503_low_26
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_26 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 28469550 - 28469280
Alignment:
| Q |
6 |
agaagcaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
105 |
Q |
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| T |
28469550 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttgtccctctaca |
28469451 |
T |
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| Q |
106 |
cactctaaccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469450 |
cactctaaccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
28469351 |
T |
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| Q |
206 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgccatagctttctaccatagatctcc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469350 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgccatagctttctaccatagatctcc |
28469280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 34734184 - 34734454
Alignment:
| Q |
6 |
agaagcaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
105 |
Q |
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| T |
34734184 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttgtccctctaca |
34734283 |
T |
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| Q |
106 |
cactctaaccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34734284 |
cactctaaccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
34734383 |
T |
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| Q |
206 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgccatagctttctaccatagatctcc |
276 |
Q |
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| T |
34734384 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgccatagctttctaccatagatctcc |
34734454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 75490 - 75759
Alignment:
| Q |
6 |
agaagcaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75490 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
75589 |
T |
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| Q |
106 |
cactctaaccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
205 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75590 |
cactcta-ccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
75688 |
T |
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| Q |
206 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgccatagctttctaccatagatctcc |
276 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
75689 |
aatctaacgtaaattgcaactaccctattaattcccaactaacatgccatagctttctaccatagatctcc |
75759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 24966169 - 24966438
Alignment:
| Q |
6 |
agaagcaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24966169 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
24966268 |
T |
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| Q |
106 |
cactctaaccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
205 |
Q |
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| T |
24966269 |
cactcta-ccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
24966367 |
T |
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| Q |
206 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgccatagctttctaccatagatctcc |
276 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
24966368 |
aatctaacgtaaattgcaactaccctattaattcccaactaacatgccatagctttctaccatagatctcc |
24966438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 80 - 276
Target Start/End: Original strand, 29317723 - 29317919
Alignment:
| Q |
80 |
gtttgcataagctttctccctctacacactctaaccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaat |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
29317723 |
gtttgcataagctttctccctctacacactctaaccatggatttctttaggaactcttgaaagttatcacaaaacaatgatgcacatgtgacatcaaaat |
29317822 |
T |
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| Q |
180 |
ctttcatctagatatggaagaccataaatctgacgtaaattgcaactaccctattaattgccaattaacatgccatagctttctaccatagatctcc |
276 |
Q |
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| T |
29317823 |
ctttcatctaaatatggaagaccataaatctgacgtaaattgcaactaccatattaattgccaattaacatgccatagctttctaccatagatctcc |
29317919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 29315533 - 29315611
Alignment:
| Q |
6 |
agaagcaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttg |
84 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29315533 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttg |
29315611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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