View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18503_low_29 (Length: 249)
Name: NF18503_low_29
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_29 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 35440191 - 35440431
Alignment:
| Q |
9 |
aagaatatctcaaaacactgcaattgtgctgagatcactagcaatttctaggtgcgaaatcttggaagcagtacttgatggtcaaggactcaatgttgag |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35440191 |
aagaaaatctcaaaacactgcaattgtgctgagatcactagcaatttctaggcgcgaaatcttggaagcagtacttgatggtcaaggactcaatgttgag |
35440290 |
T |
|
| Q |
109 |
acccttgaaaaactcacaaaaatagctccatctcaagaagaagcatccaaaatagtccaattcagtggaaacccgaataaccttgctgaagctgagtctt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35440291 |
acccttgaaaaactcacaaaaatagctccatctcaagaagaagcatccaaaatagtccaattcagcggaaacccgaataaccttgctgaagctgagtctt |
35440390 |
T |
|
| Q |
209 |
tcctatactacatccttaaatcagttccaacatcgttcaac |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35440391 |
tcctatactacatccttaaatcagttccaacatcgttcaac |
35440431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University