View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_35 (Length: 241)
Name: NF18503_low_35
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45103996 - 45104220
Alignment:
| Q |
1 |
ataccagctactactacaccagaatcagaagaagtgtcaagaccaaagagtataagtaataataataagaggagtttagaaccaaaagcaaaagctagta |
100 |
Q |
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| T |
45103996 |
ataccagctactactacaccagaatcagaagaagtaccaagaacaaagagtagaagtaataataataagaggagtttggaaccaaaagcaaaagctagta |
45104095 |
T |
|
| Q |
101 |
accaaactggaaagaagagtagaagtggttctcagtgtttggatcacattatggctgagagaaaaagaagattggagctatcacaaaagttcattgcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45104096 |
accaaactggaaagaagagtagaagtggttctcagtgtttggatcacattatggctgagagaaaaagaagattggaactatcacaaaagttcattgcact |
45104195 |
T |
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| Q |
201 |
ttcagctactattcctggcttgaag |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
45104196 |
ttcagctactattcctggcttgaag |
45104220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45130622 - 45130842
Alignment:
| Q |
1 |
ataccagctactactacaccagaatcagaagaagtgtcaagaccaaagagtataagtaataataataagaggagtttagaaccaaaagcaaaagctagta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45130622 |
ataccagctactactacaccagaatcagaagaagtgtcaataccaaagagtagaagtaataataataagaggagtttggaaccaaaagcaaaagctagta |
45130721 |
T |
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| Q |
101 |
accaaactggaaagaagagtagaagtggttctcagtgtttggatcacattatggctgagagaaaaagaagattggagctatcacaaaagttcattgcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| | || ||||||| |||||||||||||| |
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| T |
45130722 |
accaaactggaaagaagagtagaagtggttctcagtatctggatcacattatggctgagagaaaaaggagactagaattatcacagaagttcattgcact |
45130821 |
T |
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| Q |
201 |
ttcagctactattcctggctt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45130822 |
ttcagctactattcctggctt |
45130842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 1841357 - 1841253
Alignment:
| Q |
119 |
gtagaagtggttctcagtgtttggatcacattatggctgagagaaaaagaagattggagctatcacaaaagttcattgcactttcagctactattcctgg |
218 |
Q |
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||||||| |||| |||||| | ||||| || ||||| ||||||||| ||||| |||| | || | || ||||||||||||||||| |||||||| || |
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| T |
1841357 |
gtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggagttgtctgagaaattcattgcactttcagccactattcccgg |
1841258 |
T |
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| Q |
219 |
cttga |
223 |
Q |
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||||| |
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| T |
1841257 |
cttga |
1841253 |
T |
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