View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_4 (Length: 621)
Name: NF18503_low_4
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 180 - 603
Target Start/End: Complemental strand, 30166435 - 30166019
Alignment:
| Q |
180 |
gcatagagtcaaagagactaaacaacctactggcaatgactagacaaatttcatcttcactgaggagctgcaaggaggaaacagcagagctatgtgattt |
279 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30166435 |
gcatagagtcaaagagactaaacaacctactggcaatgactagacaaatttcatcttcactaaggagctgcaaggaggaaacagcagagctatgtgattt |
30166336 |
T |
|
| Q |
280 |
gtgaactggcatttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtattctgcctatcacttcccatgcttc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30166335 |
gtgaactggcatttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtattctgcctatcacttcccatgcttc |
30166236 |
T |
|
| Q |
380 |
atgataccaagagttcataatacaagatcagtatcagtaaaatggaaaatacaaatatttcacaatcaaatcaaattcttattgtttggtatcactagtt |
479 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30166235 |
atgataccaagagttcataatacaagatcaatatcagtaaaatggaaaatacaaatatttcacaatcaaatcaaattcttattgtttggtatcactagtt |
30166136 |
T |
|
| Q |
480 |
atcttaagcttgctcagagccatcgcccatcggggagtgaaagcagagactctatatacaccgccatttgggatctcatcaagtaacggtcaccatagga |
579 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30166135 |
atcttaagcttgctcagtg-------ccatcggggagtgaaagcagagactctatatacaccgccatttgggatctcataaagtaacggtcaccatagga |
30166043 |
T |
|
| Q |
580 |
atgatactcttgcagttgtccttt |
603 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
30166042 |
atgatactcttgcagttgtccttt |
30166019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 30166614 - 30166503
Alignment:
| Q |
1 |
tactcgttgtgtagcaatataagttacataacaaagccctaaaagaacacaacaagcacacaaacaccttgcacaatttcaataatgcagacataaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30166614 |
tactcgttgtgtagcaatataagttacataacaaagccctaaaagaacacaacaagcacacaaacaccttgcacaatttcaataatgcagacataaagaa |
30166515 |
T |
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| Q |
101 |
agcactatccat |
112 |
Q |
| |
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||||| |||||| |
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| T |
30166514 |
agcaccatccat |
30166503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 30130710 - 30130753
Alignment:
| Q |
512 |
gggagtgaaagcagagactctatatacaccgccatttgggatct |
555 |
Q |
| |
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|||| |||||| ||||||||| |||||||||||||||||||||| |
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| T |
30130710 |
gggaatgaaagaagagactctgtatacaccgccatttgggatct |
30130753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 30124610 - 30124655
Alignment:
| Q |
362 |
tatcacttcccatgcttcatgataccaagagttcataatacaagat |
407 |
Q |
| |
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||||||||| |||||||||||||| ||| |||||||||||||||| |
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| T |
30124610 |
tatcacttctcatgcttcatgatagcaatcgttcataatacaagat |
30124655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 181 - 594
Target Start/End: Original strand, 43164160 - 43164565
Alignment:
| Q |
181 |
catagagtcaaagagactaaacaacctactggcaatgactagacaaatttcatcttcactgaggagctgcaaggaggaaacagcagagctatgtgatttg |
280 |
Q |
| |
|
|||||||| |||||| ||||||| | ||||| ||||| || || || ||||||||| || |||||||||||||| ||||| ||||||||| | |||| | |
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| T |
43164160 |
catagagtggaagagattaaacaaacaactggaaatgagtaaacgaaattcatcttcgctaaggagctgcaaggaagaaacggcagagctacgcgattcg |
43164259 |
T |
|
| Q |
281 |
tgaactggcatttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtattctgcctatcacttcccatgcttca |
380 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| | || ||||| |||| ||||||||||||| ||||||| | |
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| T |
43164260 |
tgaaccaacatttgagctgctgataaagatcaactctactctcaattatgttatgtcttcttgcaatttcactattttgcctatcacttcacatgcttta |
43164359 |
T |
|
| Q |
381 |
tgat----accaagagttcataatacaagatcagtatcagtaaaatggaaaatacaaatatttcacaatcaaatcaaattcttattgtttggtatcacta |
476 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||||| ||||| || ||||| |||||||||||||| |||||||| | ||||| ||||||| |
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| T |
43164360 |
tgattccaaccaagagttcatgatacaagatagatatcactaaaaaggtaaatatgaatatttcacaatc-----aaattcttctagtttgttatcactg |
43164454 |
T |
|
| Q |
477 |
gttatcttaagcttgctcagagccatcgcccatcggggagtgaaagcagagactctatatacaccgccatttgggatctcatcaagtaacggtcaccata |
576 |
Q |
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|| ||||||||||||||||| | ||||| ||||||||||||||||| ||| ||||||||| || || ||||| | |||| || |||||||| |
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| T |
43164455 |
gtcatcttaagcttgctcagtg-------ccatcagggagtgaaagcagagattctgtatacaccgatatctgcgatcttacaaagtgacaatcaccata |
43164547 |
T |
|
| Q |
577 |
ggaatgatactcttgcag |
594 |
Q |
| |
|
||| ||||||||| |||| |
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| T |
43164548 |
ggagtgatactctagcag |
43164565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 515 - 603
Target Start/End: Original strand, 41310811 - 41310899
Alignment:
| Q |
515 |
agtgaaagcagagactctatatacaccgccatttgggatctcatcaagtaacggtcaccataggaatgatactcttgcagttgtccttt |
603 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||| | ||||||||||||| |
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| T |
41310811 |
agtgaaagtagagactctgtatacaccgccatttgggatctcataaagcaacggtcactataggagtgatactttagcagttgtccttt |
41310899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 43163971 - 43164070
Alignment:
| Q |
13 |
agcaatataagttacataacaaagccctaaaagaacacaacaagcacacaaacaccttgcacaatttcaataatgcagacataaagaaagcactatccat |
112 |
Q |
| |
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||||| |||||||||||||||||||| || ||||||| ||||||| |||||| ||| ||||||||||| || ||| |||||||||||||| ||||||| |
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| T |
43163971 |
agcaacataagttacataacaaagccaaaatagaacacgacaagcattcaaacatcttacacaatttcaacaaagcaaacataaagaaagcattatccat |
43164070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 487
Target Start/End: Original strand, 41310714 - 41310807
Alignment:
| Q |
389 |
agagttcataatacaagatcagtatcagtaaaatggaaaatacaaatatttcacaatcaaatcaaattcttattgtttggtatcactagttatcttaag |
487 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| | |||||||||||||||| |||||||| |
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| T |
41310714 |
agagttcataatacaagatagatatcagtaaaatgataaataccaatatttcacaatc-----aaattcttctagtttggtatcactagtcatcttaag |
41310807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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