View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_5 (Length: 585)
Name: NF18503_low_5
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_5 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0018 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 13 - 567
Target Start/End: Complemental strand, 31045001 - 31044446
Alignment:
| Q |
13 |
catagggtttgtaatatcatgagtattttctcaattcattctaaattcacagtgatgttgttgagatttcatcttcttctccattgttggtaatgttcgt |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
31045001 |
catagggtttgtagtatcatgagtattttctcaattcattctgcattcacagtgatcttgctgagatttcatctgcttctccattgttggtaatgttcgt |
31044902 |
T |
|
| Q |
113 |
gctgattgagcttttgatttttctgaggttttgtttcactgaggcatatctcagcaatgtgattcaccattgtgttgctttttcgcagtaaggatctaaa |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31044901 |
gctgattgagcttttgatttttctgaggtttcgtttcactgaggcatatctcagcaatgtgattcaccattgtgttgctttttcgcagtacggatctaaa |
31044802 |
T |
|
| Q |
213 |
ctgaagccatataatacaataaaaatgttggataaactgaaatgaaaattggtttgttcatgtagataatgaatggttaaatatc-ttcattcttattag |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31044801 |
ctgaagccatataatacaataaaaatgttggataaactgaaatgaaaattggtttgtccatgtagataatgaatggttaaatatctttcattcttattag |
31044702 |
T |
|
| Q |
312 |
ttttattgacatttttacttcgatttttaaagataatgaatagttagtnnnnnnnnttcaattagaccttttttctttatgaattttggcattttatgaa |
411 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31044701 |
ttttaatgacatttttacttcgatttttaaagataatgaatagttagtaaaaaaaaatcaattagaccttttttctttatgaattttggcattttatgaa |
31044602 |
T |
|
| Q |
412 |
ttggagagtcaagaggattaaatagataacatctttgaaatgttgcgcccgtgttgaattttggcatattatgcattggagagtcaaaaggataaactgg |
511 |
Q |
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| T |
31044601 |
ttggagagtcaagaggattaactagataacatcgttgaaatgctgcacccgtgttgaattttggcatattatgcattggagagtcaaaaggataaactgg |
31044502 |
T |
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| Q |
512 |
ataacatcattgaaattggatttttacttctgttttggtcttgctatggccgtatt |
567 |
Q |
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| T |
31044501 |
ataacatcattgaaattggatttttacttctgttttggtcttgctatggccgtatt |
31044446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 170; Significance: 6e-91; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 18332 - 18577
Alignment:
| Q |
16 |
agggtttgtaatatcatgagtattttctcaattcattctaaattcacagtgatgttgttgagatttcatcttcttctccattgtt-ggtaatgttcgtgc |
114 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||| ||||||||||||| ||| |||||||||| |
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| T |
18332 |
agggtttgcaatatcatgagtattttctcaattcattctgcattcaaagtgatcttgctgagatttcatctgcttctccattgtttggtcatgttcgtgc |
18431 |
T |
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| Q |
115 |
tgattgagcttttgatttttctgaggttttgtttcactgaggcatatctcagcaatgtgattcaccattgtgttgctttttcgcagtaaggatctaaact |
214 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18432 |
tgattgagcttttgatttttccgaggtttcgtttcactgaggtatatctcagcaatgtgtatcaccattgtgttgctttttcgcagtaaggatctaaact |
18531 |
T |
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| Q |
215 |
gaagccatataatacaataaaaatgttggataaactgaaatgaaaa |
260 |
Q |
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||||||||||||||||| |||||||||| |||||||| || ||||| |
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| T |
18532 |
gaagccatataatacaacaaaaatgttgcataaactgcaaagaaaa |
18577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 273 - 556
Target Start/End: Original strand, 18654 - 18946
Alignment:
| Q |
273 |
tgtagataatgaatggttaaatatctt-cattcttattagttttattgacatttttacttcgatttttaaagataatgaatagttagtnnnnnnnnttca |
371 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
18654 |
tgtagataatgaatggttaaatatctttcattctttgtagttttattgacatttttgcttcgatttttaaagataatgaatagttagttaaaaaaattca |
18753 |
T |
|
| Q |
372 |
attagacctt----------ttttctttatgaattttggcattttatgaattggagagtcaagaggattaaatagataacatctttgaaatgttgcgccc |
461 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||| |||| || |
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| T |
18754 |
attagaccttctttttttttttttttttatgaattttggcattttatgaagt--agagtcaaaaggattaactagataacatcattgaaatgctgcgtcc |
18851 |
T |
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| Q |
462 |
gtgttgaattttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttttggtcttgct |
556 |
Q |
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| T |
18852 |
gtattgaattttggcatattatgaataggagagtcaaaaggattaactggataacatcattgaaattgaatttttatttctgtttttgtcttgct |
18946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 106 - 260
Target Start/End: Original strand, 172505 - 172664
Alignment:
| Q |
106 |
tgttcgtgctgattgagcttttgatttttctgaggttttgtttcactgagg-----catatctcagcaatgtgattcaccattgtgttgctttttcgcag |
200 |
Q |
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||||||||| |||||||||||||||||||| ||||| | |||||||||||| ||||||||||||||||| |||||||||| || ||||||||||| |
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| T |
172505 |
tgttcgtgccgattgagcttttgatttttccgaggtatcgtttcactgaggtatattatatctcagcaatgtgaatcaccattgtatttctttttcgcag |
172604 |
T |
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| Q |
201 |
taaggatctaaactgaagccatataatacaataaaaatgttggataaactgaaatgaaaa |
260 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||| |||||||| || ||||| |
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| T |
172605 |
taaggatctaaactgaaggcttataatacaataaaaatgttgcataaactgcaaagaaaa |
172664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 469 - 554
Target Start/End: Original strand, 172894 - 172979
Alignment:
| Q |
469 |
attttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttttggtcttg |
554 |
Q |
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|||||||||||||||| |||||||||||||||||| |||| |||||| |||||||||||| |||| |||||||||||| |||||| |
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| T |
172894 |
attttggcatattatgtgttggagagtcaaaaggattaactagataacctcattgaaattgaatttgtacttctgtttttgtcttg |
172979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 275 - 452
Target Start/End: Original strand, 172780 - 172952
Alignment:
| Q |
275 |
tagataatgaatggttaaatat-cttcattcttattagttttattgacatttttacttcgatttttaaagataatgaatagttagtnnnnnnnnttcaat |
373 |
Q |
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||||| ||||||| |||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||| ||| |||| | |
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| T |
172780 |
tagatcatgaatgattaaatattcttcattctttttaattttattgacatttttgtttcgatttttaaagataatggata-tta----aacaatttcagt |
172874 |
T |
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| Q |
374 |
tagaccttttttctttatgaattttggcattttatgaattggagagtcaagaggattaaatagataacatctttgaaat |
452 |
Q |
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|||||| ||||| |||||| |||||||||| ||||| |||||||||||| |||||||| |||||||| || ||||||| |
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| T |
172875 |
tagacccttttt-tttatggattttggcatattatgtgttggagagtcaaaaggattaactagataacctcattgaaat |
172952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 172391 - 172477
Alignment:
| Q |
15 |
tagggtttgtaatatcatgagtattttctcaattcattctaaattcacagtgatgttgttgagatttcatcttcttctccattgttg |
101 |
Q |
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|||| |||||||||||||||||||||||| ||||||| | |||||| ||||| ||| |||||||||||| |||||||||||||| |
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| T |
172391 |
taggatttgtaatatcatgagtattttcttaattcatcccgcattcacggtgatcttgctgagatttcatccgcttctccattgttg |
172477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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