View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_6 (Length: 541)
Name: NF18503_low_6
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Original strand, 14433270 - 14433757
Alignment:
| Q |
18 |
aagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctctatgtaagatt |
117 |
Q |
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| T |
14433270 |
aagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaagtcaccacctctatgtaagatt |
14433369 |
T |
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| Q |
118 |
catttttatcatacacagcaacatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaataaaattaaacac |
217 |
Q |
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| T |
14433370 |
catttttatcatacacagcagcatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaataaaattaaacgc |
14433469 |
T |
|
| Q |
218 |
attgttagttaaccttccttgcatggtcggcccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtata |
317 |
Q |
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| T |
14433470 |
attgttagttaaccttccttgcatggtcggcccagtaaattttatttgtaggtgagacctaaaacatattttaatatacgagacatttttagtctgtata |
14433569 |
T |
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| Q |
318 |
cgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagc |
417 |
Q |
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| T |
14433570 |
cgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagc |
14433669 |
T |
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| Q |
418 |
aaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
505 |
Q |
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| T |
14433670 |
gaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
14433757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 14441631 - 14441791
Alignment:
| Q |
48 |
gagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctctatgtaagattcatttttatcatacacagcaacatcaccac |
147 |
Q |
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||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| || |||| |||||||| |||| ||||||||| |
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| T |
14441631 |
gagttcaccactggtgttcgaagagtcccatcagggttgtttggggaggtcactacctctatgtaaggtttgttttcatcatacaaagcagcatcaccac |
14441730 |
T |
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| Q |
148 |
cccattgaaacatccttgaatgcaatat-attaattgcatttttgtattcctacaaaataaa |
208 |
Q |
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| T |
14441731 |
cccattgaaatagccttgattgca-tatgatcaatcacatcttggtattcctacaaaataaa |
14441791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 495
Target Start/End: Original strand, 14443011 - 14443164
Alignment:
| Q |
342 |
gaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttg |
441 |
Q |
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||||||| |||||||||||||||| || || ||||||||||||||| ||||||| | |||| ||||||| | ||| ||||| ||| | ||| ||||| |
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| T |
14443011 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
14443110 |
T |
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| Q |
442 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
495 |
Q |
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| T |
14443111 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaac |
14443164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 20626818 - 20626885
Alignment:
| Q |
249 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtata |
317 |
Q |
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| T |
20626818 |
ccaataaattttatttgtagacgagctttaaaacaaattttaa-atatgaggcttttttagtctgtata |
20626885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 32598355 - 32598443
Alignment:
| Q |
249 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa |
337 |
Q |
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| T |
32598355 |
ccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataa |
32598443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 23099366 - 23099316
Alignment:
| Q |
245 |
cggcccaataaattttatttgtagatgagacctaaaacatattttaatata |
295 |
Q |
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| T |
23099366 |
cggcccaataaattttattcgtatatgtgtcctaaaacaaattttaatata |
23099316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 21090503 - 21090454
Alignment:
| Q |
244 |
tcggcccaataaattttatttgtagatgagacctaaaacatattttaata |
293 |
Q |
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| T |
21090503 |
tcggcccaataatttttatttgtagatgaggtctaaatcaaattttaata |
21090454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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