View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18503_low_7 (Length: 532)

Name: NF18503_low_7
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18503_low_7
NF18503_low_7
[»] chr6 (12 HSPs)
chr6 (5-514)||(30945227-30945734)
chr6 (5-329)||(30955487-30955809)
chr6 (95-288)||(31230110-31230303)
chr6 (95-255)||(31145101-31145261)
chr6 (395-514)||(30955869-30955989)
chr6 (95-255)||(31189159-31189319)
chr6 (117-255)||(31200966-31201104)
chr6 (95-263)||(30961325-30961493)
chr6 (95-259)||(31171410-31171574)
chr6 (95-258)||(31224830-31224993)
chr6 (95-259)||(30992807-30992971)
chr6 (117-201)||(31214580-31214664)
[»] chr8 (1 HSPs)
chr8 (128-208)||(44036038-44036118)


Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 514
Target Start/End: Original strand, 30945227 - 30945734
Alignment:
Q  5 acaaatcaaactagcgagtattttccagattggatatacaataagctagaaaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30945227 acaaatcaaactagcgagtattttccagattggatatacaataagctagaaacggatagtgatttgagatctgacatagtgatggccattgaagaaaatg 30945326  T
Q  105 agattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtag 204  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945327 agattgcaaaaggaatgactattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtag 30945426  T
Q  205 catgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttggatctattagtatat 304  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  30945427 catgaatatccttgaaataccaccaaaacctttggtttcttctcctacaagatcattattggaatcttcaacttcttgaaatttggatctataag--tat 30945524  T
Q  305 atttcaagttaacttttcattttgtnnnnnnnnnnnnnnggtatgttcttcataatacttttttcgtacttnnnnnnnnnnnnnnnnnnggcaagtagat 404  Q
    |||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||                  |||||||||||    
T  30945525 atttcaagttaacttttcattttgtaaaaaaatgaaaaaggtatgttcttcataatacttttttcgtacttttattattattattattaggcaagtagat 30945624  T
Q  405 tacatatatgtgattcaaataccaatgtgatctatgtggataactgaaggcaaagaagagtagaagtttgtactgttattgatttttatgaagttcattt 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30945625 tacatatatgtgattcaaataccaatgtgatctatgtggataactgaaggcaaagaagagtagaagtttgtattgttattgatttttatgaagttcattt 30945724  T
Q  505 ttactatcct 514  Q
    ||||||||||    
T  30945725 ttactatcct 30945734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 5 - 329
Target Start/End: Original strand, 30955487 - 30955809
Alignment:
Q  5 acaaatcaaactagcgagtattttccagattggatatacaataagctagaaaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955487 acaaatcaaactagcgagtattttccagattggatatacaataagctagaaaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatg 30955586  T
Q  105 agattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955587 agattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtag 30955686  T
Q  205 catgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttggatctattagtatat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  30955687 catgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttggatctataag--tat 30955784  T
Q  305 atttcaagttaacttttcattttgt 329  Q
    |||||||||||||||||||||||||    
T  30955785 atttcaagttaacttttcattttgt 30955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 95 - 288
Target Start/End: Original strand, 31230110 - 31230303
Alignment:
Q  95 gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt 194  Q
    |||||| |||| |||||||   || |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  31230110 gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt 31230209  T
Q  195 tggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaattt 288  Q
    | ||||| | || ||||    | |||||||||||||||||| |  |||||||||||||||||||| ||   ||||| ||| |||| ||||||||    
T  31230210 tagaaggcaacaagaattgtttggaaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattt 31230303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 95 - 255
Target Start/End: Complemental strand, 31145261 - 31145101
Alignment:
Q  95 gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt 194  Q
    |||||| ||||||||||||   ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||| ||||||||||    
T  31145261 gaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagttattgaaatgt 31145162  T
Q  195 tggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactag 255  Q
    | |||| || |||||||   |||||||||||||| ||||| ||| ||||||||||||||||    
T  31145161 tagaagttaacatgaattcacttgaaataccacccaaaccgttgctttcttctcctactag 31145101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 30955869 - 30955989
Alignment:
Q  395 gcaagtagattacatatatgtgattcaaataccaatgtgatctatgtggataactgaaggc-aaagaagagtagaagtttgtactgttattgatttttat 493  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||  |||||| ||| ||| ||||  ||| ||||||||||||    
T  30955869 gcaattagattacatatatgtgattcaaataccaatgtgatctatgtggataagttaaggctgaagaagtgtaaaaggttgttttgtcattgatttttat 30955968  T
Q  494 gaagttcatttttactatcct 514  Q
    |||||||||||||||||||||    
T  30955969 gaagttcatttttactatcct 30955989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 95 - 255
Target Start/End: Complemental strand, 31189319 - 31189159
Alignment:
Q  95 gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt 194  Q
    |||||| | ||||||||||   ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||    
T  31189319 gaagaagacgagattgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgt 31189220  T
Q  195 tggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactag 255  Q
    | |||| || ||||||| | |||||||||||||| ||||| |   ||||||| ||||||||    
T  31189219 tagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactag 31189159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 117 - 255
Target Start/End: Complemental strand, 31201104 - 31200966
Alignment:
Q  117 gaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtcct 216  Q
    ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||| |||| || ||||||| | ||    
T  31201104 gaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttact 31201005  T
Q  217 tgaaataccaccaaaacctttggtttcttctcctactag 255  Q
    |||||||||||| ||||| |   ||||||| ||||||||    
T  31201004 tgaaataccacctaaaccatatctttcttcacctactag 31200966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 95 - 263
Target Start/End: Original strand, 30961325 - 30961493
Alignment:
Q  95 gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt 194  Q
    ||||||||||||||||||||  ||||||||||||| ||||| ||||| ||||||||||| || ||||   | || |||||||||| |||  |||||||||    
T  30961325 gaagaaaatgagattgcaaagagaatgaccattgtgggtttgtggtgtattcaaacatttcctaatggcaggcctacaatgagtaaagtagttgaaatgt 30961424  T
Q  195 tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttggtttcttctcctactagatcattat 263  Q
    | |||| || ||||||| || || ||||||||||||||||| ||| |||| |||||||||||||||||||    
T  30961425 tagaagttaacatgaat-tcattggaaataccaccaaaaccattgctttcgtctcctactagatcattat 30961493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 95 - 259
Target Start/End: Complemental strand, 31171574 - 31171410
Alignment:
Q  95 gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt 194  Q
    |||||| ||||||||||||   ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||    
T  31171574 gaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgt 31171475  T
Q  195 tggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatca 259  Q
    | |||| ||  ||||||   || ||||| ||||||||||| ||   ||| ||||| |||||||||    
T  31171474 tagaagttacaatgaattcactggaaatgccaccaaaaccattacattcatctcccactagatca 31171410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 258
Target Start/End: Original strand, 31224830 - 31224993
Alignment:
Q  95 gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt 194  Q
    |||||| || |||||||||   ||||||||||||| ||||| ||||| |||||||| || || |||||| | || |||||||||| ||||||||||||||    
T  31224830 gaagaagataagattgcaaggagaatgaccattgtaggtttgtggtgtattcaaacgtttcctaatgataggcctacaatgagtaaagtgattgaaatgt 31224929  T
Q  195 tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttggtttcttctcctactagatc 258  Q
    | || | |||||||||| || || ||||| ||||||||||| ||| |||||||||| ||||||||    
T  31224930 tagatgttagcatgaat-tcgttggaaatgccaccaaaaccattgctttcttctccgactagatc 31224993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 95 - 259
Target Start/End: Original strand, 30992807 - 30992971
Alignment:
Q  95 gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt 194  Q
    |||||| |||||||||||||  | |||||||||||  |||| ||||| ||||||||||| || ||||   |||| |||||||||| |||  |||||||||    
T  30992807 gaagaagatgagattgcaaagaggatgaccattgtgagtttgtggtgtattcaaacatttcctaatggcagacctacaatgagtaaagtagttgaaatgt 30992906  T
Q  195 tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttggtttcttctcctactagatca 259  Q
    | |||| |  ||| ||| || || ||||||||||||||||| ||| |||| |||||||||||||||    
T  30992907 tagaagttgacattaat-tcgttggaaataccaccaaaaccattgctttcgtctcctactagatca 30992971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 31214580 - 31214664
Alignment:
Q  117 gaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaagg 201  Q
    |||||||||| || || |||||||||||||||||| | ||||||||| ||||  ||||||||||||| ||||||||||| |||||    
T  31214580 gaatgaccatagtaggattatggtgcattcaaacacttccaaatgatagacctgcaatgagtagagttattgaaatgttagaagg 31214664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 44036038 - 44036118
Alignment:
Q  128 gttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatg 208  Q
    |||||||| ||||||||||||||| | || | | || |||| ||||| |||| ||||||||| |||||||| |||||||||    
T  44036038 gttggtttgtggtgcattcaaacaattcctactcatagacctacaataagtaaagtgattgatatgttggatggtagcatg 44036118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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