View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_low_8 (Length: 483)
Name: NF18503_low_8
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 119 - 465
Target Start/End: Original strand, 46031978 - 46032321
Alignment:
| Q |
119 |
gagatcacatatatacattttttaaaactaattactaacatttgtcggaggtttaggacttacgctttcctcgaacatccaggaccttaaaaggttcgct |
218 |
Q |
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| T |
46031978 |
gagatcacatatatacattttttaaaactaattactaacatttgtcggaggtttaggacttactctttcctcgaacatccaggaccttaaaaggttcgct |
46032077 |
T |
|
| Q |
219 |
tctaccttcccgaatgcacactccaattgaatttgattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactca |
318 |
Q |
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| T |
46032078 |
tctaccttctcgaatgcacactccaattgaattagattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactca |
46032177 |
T |
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| Q |
319 |
atatctttgtcgatatcagcaactccaatatttcttagtgtaatgaatttgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgag |
418 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46032178 |
atctctttgtcgatatcagcaactcc---atttcttagtgtaatgaattcgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgag |
46032274 |
T |
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| Q |
419 |
tattaaattcctcagctgtccaatcctctttttcaaagtcaccatat |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46032275 |
tattaaattcctcagctgtccaatcctctttttcaaagtcaccatat |
46032321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 129 - 465
Target Start/End: Original strand, 46019314 - 46019649
Alignment:
| Q |
129 |
atatacattttttaaa-actaattactaacatttgtcggaggtttaggac-ttacgctttcctcgaacatccaggaccttaaaaggttcgcttctacctt |
226 |
Q |
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||||||||||||||| | |||||||||| |||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46019314 |
atatacattttttaacgattaattactaaagtttgtcggagatttaggaccttaccctttcctcgaacatccaggaccttaaaaggttcgcttctacctt |
46019413 |
T |
|
| Q |
227 |
cccgaatgcacactccaattgaatttgattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactcaatatcttt |
326 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| | |
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| T |
46019414 |
cccgaatgcacgctccaattgaattagattgaactattttaacccctagccgaaattgaccggttcttctctttgatatatctgtaaactcaatctctat |
46019513 |
T |
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| Q |
327 |
gtcgatatcagcaactccaatatttcttagtgtaatgaatttgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtattaaat |
426 |
Q |
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|| ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||| | ||||||| ||||||||||| |||||||||||||||| |
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| T |
46019514 |
gttgatatcagcaactcc---atttcttagtgtaatgattttatttcctttcagtagttgtccttttccaactcttggaggtacaatttgagtattaaac |
46019610 |
T |
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| Q |
427 |
tcctcagctgtccaatcctctttttcaaagtcaccatat |
465 |
Q |
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| T |
46019611 |
tcctcagctgtccaatcctctttttcaaagtcaccatat |
46019649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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