View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18503_low_9 (Length: 481)

Name: NF18503_low_9
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18503_low_9
NF18503_low_9
[»] chr3 (12 HSPs)
chr3 (19-352)||(43744985-43745317)
chr3 (373-449)||(43745755-43745831)
chr3 (367-473)||(13898046-13898152)
chr3 (367-473)||(14623830-14623936)
chr3 (367-468)||(49607417-49607518)
chr3 (367-473)||(8956765-8956871)
chr3 (367-473)||(35536629-35536735)
chr3 (372-468)||(48587087-48587183)
chr3 (384-474)||(33118841-33118931)
chr3 (362-468)||(53982009-53982115)
chr3 (372-468)||(26141528-26141624)
chr3 (367-431)||(36707457-36707521)
[»] chr2 (8 HSPs)
chr2 (362-469)||(27864702-27864809)
chr2 (385-468)||(5574484-5574567)
chr2 (391-474)||(7465725-7465808)
chr2 (367-474)||(20700818-20700925)
chr2 (367-474)||(28863458-28863565)
chr2 (391-468)||(17473047-17473124)
chr2 (362-431)||(19930853-19930922)
chr2 (367-475)||(33436089-33436197)
[»] chr8 (9 HSPs)
chr8 (384-469)||(10284626-10284711)
chr8 (362-431)||(20074967-20075036)
chr8 (362-468)||(23122593-23122699)
chr8 (362-468)||(34012292-34012398)
chr8 (372-429)||(30479509-30479566)
chr8 (367-468)||(40423939-40424040)
chr8 (417-473)||(42354579-42354635)
chr8 (367-474)||(5957833-5957940)
chr8 (367-474)||(37038482-37038589)
[»] chr5 (6 HSPs)
chr5 (367-468)||(2740277-2740378)
chr5 (362-468)||(33149634-33149740)
chr5 (367-471)||(16327904-16328008)
chr5 (385-464)||(14831835-14831914)
chr5 (367-474)||(18520874-18520981)
chr5 (362-468)||(40145405-40145511)
[»] chr4 (9 HSPs)
chr4 (367-474)||(50052418-50052525)
chr4 (367-468)||(11511458-11511559)
chr4 (390-469)||(3481680-3481759)
chr4 (367-474)||(29239889-29239996)
chr4 (367-468)||(6034047-6034148)
chr4 (391-468)||(24995103-24995180)
chr4 (367-468)||(41236350-41236451)
chr4 (367-468)||(48183045-48183146)
chr4 (372-429)||(55475199-55475256)
[»] chr7 (7 HSPs)
chr7 (362-468)||(19329840-19329946)
chr7 (367-468)||(3434565-3434666)
chr7 (367-468)||(7389392-7389493)
chr7 (405-474)||(16374814-16374883)
chr7 (367-468)||(19436183-19436284)
chr7 (367-468)||(8080379-8080480)
chr7 (367-468)||(36361909-36362010)
[»] chr1 (5 HSPs)
chr1 (362-468)||(27564731-27564837)
chr1 (367-474)||(51898673-51898780)
chr1 (367-468)||(3000322-3000423)
chr1 (362-431)||(37649196-37649265)
chr1 (367-431)||(23597124-23597188)
[»] chr6 (3 HSPs)
chr6 (384-468)||(31109396-31109480)
chr6 (382-473)||(31953021-31953112)
chr6 (384-468)||(32869698-32869782)
[»] scaffold1268 (1 HSPs)
scaffold1268 (362-474)||(919-1031)
[»] scaffold1267 (1 HSPs)
scaffold1267 (362-474)||(919-1031)
[»] scaffold0110 (1 HSPs)
scaffold0110 (382-430)||(8897-8945)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 43744985 - 43745317
Alignment:
Q  19 tgtagtgcaccctaactttcatatttcccctacgtgcaagcactattattttcgtaataatttacgtcccttacttgtaatctaaggctgcttcccgtat 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43744985 tgtagtgcaccctaactttcatatttccc-tacgtgcaagcactattattttcgtaataatttacgtcccttacttgtaatctaaggctgcttcccgtat 43745083  T
Q  119 atcatatgatgggttactaagttaaatgctactaccagcttccacaacaatttgcacgcatcatatcatatcatataaattataattaccttttgccatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43745084 atcatatgatgggttactaagttaaatgctactaccagcttccacaacaatttgcacgcatcatatcatatcatataaattataattaccttttgccatc 43745183  T
Q  219 gccagaattattggattgaacaaccatccacgtacattcattcattcgtgagtagtctatcaatttcaattttcaataaccacagtagtaattgtgaaaa 318  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43745184 gccagaattattggattgaacaaccatccacgttaattcattcattcgtgagtagtctatcaatttcaattttcaataaccacagtagtaattgtgaaaa 43745283  T
Q  319 taatggatatactcaataaccacggtatcttcta 352  Q
    ||||||||||||||||||||||||||||||||||    
T  43745284 taatggatatactcaataaccacggtatcttcta 43745317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 43745755 - 43745831
Alignment:
Q  373 tacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcac 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  43745755 tacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgtcatcacgtggatctcac 43745831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 473
Target Start/End: Complemental strand, 13898152 - 13898046
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||| ||||| ||||||| |||||||||||| | |||||| |||| ||||||| |||||||   ||| || || |||||| |||||||||||||||    
T  13898152 taatgatagataaacatccttaggtggcaatacaccccttgacacccacataaaaatctgacacgtgttcatgtggacctcacacaagcacactttctct 13898053  T
Q  467 ttcatct 473  Q
    |||||||    
T  13898052 ttcatct 13898046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 473
Target Start/End: Complemental strand, 14623936 - 14623830
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||||||| |||||||||||| | |||||| |||| ||||||| ||||| |   ||| || || |||||| |||||||||||||||    
T  14623936 taatgatacatagacatccttaggtggcaatacaccccttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaagcacactttctct 14623837  T
Q  467 ttcatct 473  Q
    |||||||    
T  14623836 ttcatct 14623830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 468
Target Start/End: Original strand, 49607417 - 49607518
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| |||| |||| |||||||||||||||    
T  49607417 taatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctct 49607516  T
Q  467 tt 468  Q
    ||    
T  49607517 tt 49607518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 473
Target Start/End: Original strand, 8956765 - 8956871
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||||||| |||||||||||  |||||||| |||| ||||||| |||||||   ||| || || || ||| |||||||||| ||||    
T  8956765 taatgatacatagacatccttatgtggcaatacatcctttgacacccacataaaaatgtgacacgtgttcatgtggaccttacacaagcacacttcctct 8956864  T
Q  467 ttcatct 473  Q
    |||||||    
T  8956865 ttcatct 8956871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 473
Target Start/End: Original strand, 35536629 - 35536735
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||||||| ||||||||||||  ||||||| |||| ||||||| |||||||   ||| || || || ||| |||||||||| ||||    
T  35536629 taatgatacatagacatccttatgtggcaatacaccatttgacacccacataaaaatgtgacacgtggtcatgtggaccttacacaagcacacttcctct 35536728  T
Q  467 ttcatct 473  Q
    |||||||    
T  35536729 ttcatct 35536735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 468
Target Start/End: Complemental strand, 48587183 - 48587087
Alignment:
Q  372 atacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctcttt 468  Q
    ||||||| ||| ||||| |||||||||||| |||||||| | || ||||||| |||||||   |||||| |||| | || ||| |||||||||||||    
T  48587183 atacatagatacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggatcccgcacaagtacactttctcttt 48587087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 474
Target Start/End: Complemental strand, 33118931 - 33118841
Alignment:
Q  384 ccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctctttcatctc 474  Q
    ||||| ||| |||||||| |||||||| ||||  ||||||||||||||   |||||| |||| | || || ||||||||||||||| ||||    
T  33118931 ccttaggtgacaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatccctcagaaacacactttctctttcctctc 33118841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 468
Target Start/End: Original strand, 53982009 - 53982115
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | | ||||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| || | | || ||||||||||    
T  53982009 atgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 53982108  T
Q  462 tctcttt 468  Q
    |||||||    
T  53982109 tctcttt 53982115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 468
Target Start/End: Complemental strand, 26141624 - 26141528
Alignment:
Q  372 atacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctcttt 468  Q
    ||||||| | ||||||| |||||||||||| |||| ||| ||||  |||||| |||||||   |||| | || | |||| |||||||||||||||||    
T  26141624 atacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcacactttctcttt 26141528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 36707521 - 36707457
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacg 431  Q
    |||| ||||||| ||| ||||| ||| |||||||| |||||||||||||  |||||| |||||||    
T  36707521 taatgatacatagatacccttaggtgacaatacaccctttgacatccacacaaaaatctgacacg 36707457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 469
Target Start/End: Original strand, 27864702 - 27864809
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | | ||||| |||||||||||| |||||||||||||  |||||| |||||||  ||||||| || | | || ||||||||||    
T  27864702 atgagtaatgatacatagacacccttatgtggcaatacaccctttgacatccacacaaaaatctgacacgtaatcacgtggaccccgcaaaagcacactt 27864801  T
Q  462 tctctttc 469  Q
    ||||||||    
T  27864802 tctctttc 27864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 468
Target Start/End: Complemental strand, 5574567 - 5574484
Alignment:
Q  385 cttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctcttt 468  Q
    |||| |||||||||||| |||||||| |||| ||||||| |||||||   |||||| |||| | || |||||||||||||||||    
T  5574567 cttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttt 5574484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 474
Target Start/End: Complemental strand, 7465808 - 7465725
Alignment:
Q  391 tggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctctttcatctc 474  Q
    ||||||||||| |||||||| ||||  |||||| |||||||   |||||| || | |||| ||||||||||||||||| |||||    
T  7465808 tggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttatctc 7465725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 20700818 - 20700925
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||||||| |||||||||||| |||||||  | ||  |||||| |||||||   |||||| || | | ||||||||||||||||||    
T  20700818 taatgatacatagacatccttatgtggcaatacaccctttgactcctacacaaaaatctgacacgtagtcacgtggaccccgcataagcacactttctct 20700917  T
Q  467 ttcatctc 474  Q
    ||| ||||    
T  20700918 ttcctctc 20700925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 28863458 - 28863565
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| || | | || |||||||||||||||    
T  28863458 taatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 28863557  T
Q  467 ttcatctc 474  Q
    || |||||    
T  28863558 tttatctc 28863565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 17473047 - 17473124
Alignment:
Q  391 tggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctcttt 468  Q
    ||||||||||| |||||||| ||||  |||||| |||||||   |||||| |||| | || |||||||||||||||||    
T  17473047 tggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttt 17473124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 19930922 - 19930853
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacg 431  Q
    |||| |||| ||||||| | | ||||| |||||||||||| |||||||||||||  |||||| |||||||    
T  19930922 atgaataatgatacatagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacg 19930853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 475
Target Start/End: Complemental strand, 33436197 - 33436089
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| |||||||||||| |||||||| ||||  |||||| | |||||   |||||| || | | || |||||||||||||||    
T  33436197 taatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctct 33436098  T
Q  467 ttcatctca 475  Q
    ||| |||||    
T  33436097 ttcctctca 33436089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 469
Target Start/End: Complemental strand, 10284711 - 10284626
Alignment:
Q  384 ccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctctttc 469  Q
    ||||||||| ||||||||||||||||| ||||  ||||||||||||||   |||||| || | | || ||||||||||||||||||    
T  10284711 ccttaagtgacaatacactctttgacacccacacaaaaatttgacacgtagtcacgtggaccccgcacaagcacactttctctttc 10284626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 20075036 - 20074967
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacg 431  Q
    |||| |||| ||||||| | ||||||| ||||||||||||||||||||| |||| ||||||| |||||||    
T  20075036 atgagtaatgatacatagacatccttaggtggcaatacactctttgacacccacataaaaatgtgacacg 20074967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 468
Target Start/End: Complemental strand, 23122699 - 23122593
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | | ||||||||||||||||||  ||||||| ||||  |||||| |||||||   |||||| || | | |||||||||||||    
T  23122699 atgagtaatgatacatagacacccttaagtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagcacactt 23122600  T
Q  462 tctcttt 468  Q
    |||||||    
T  23122599 tctcttt 23122593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 468
Target Start/End: Complemental strand, 34012398 - 34012292
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | | ||||| |||| ||||||| |||||||| ||||  ||||||||||||||   |||||| |||| | || ||||||||||    
T  34012398 atgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactt 34012299  T
Q  462 tctcttt 468  Q
    |||||||    
T  34012298 tctcttt 34012292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 30479566 - 30479509
Alignment:
Q  372 atacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgaca 429  Q
    ||||||||| | ||||| |||||||||||| ||||||||||||| ||||||| |||||    
T  30479566 atacataaacacccttaggtggcaatacaccctttgacatccacataaaaatctgaca 30479509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 468
Target Start/End: Complemental strand, 40424040 - 40423939
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| ||| ||||| |||||||||||| |||||||||||||  |||||| |||||||   ||| || || | | || |||||||||||||||    
T  40424040 taatgatacatagatacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctct 40423941  T
Q  467 tt 468  Q
    ||    
T  40423940 tt 40423939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 473
Target Start/End: Complemental strand, 42354635 - 42354579
Alignment:
Q  417 taaaaatttgacacgacatcacgtagatctcacataagcacactttctctttcatct 473  Q
    ||||||| |||||||   ||| || ||||||||||||||||||||||||||||||||    
T  42354635 taaaaatctgacacgtgttcatgtggatctcacataagcacactttctctttcatct 42354579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 5957833 - 5957940
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | || |||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| |||| | || || ||||||||||||    
T  5957833 taatgatacatagacattcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcacactttctct 5957932  T
Q  467 ttcatctc 474  Q
    ||| ||||    
T  5957933 ttcctctc 5957940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 37038482 - 37038589
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||| ||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| |||| | || ||||||||||||| |    
T  37038482 taatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctat 37038581  T
Q  467 ttcatctc 474  Q
    ||| ||||    
T  37038582 ttcctctc 37038589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 468
Target Start/End: Original strand, 2740277 - 2740378
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||||||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| |||| | || |||||||||||||||    
T  2740277 taatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctct 2740376  T
Q  467 tt 468  Q
    ||    
T  2740377 tt 2740378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 468
Target Start/End: Complemental strand, 33149740 - 33149634
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | | ||||| |||| ||||||| |||||||| ||||  ||||||||||||||   |||||| |||| | || ||||||||||    
T  33149740 atgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactt 33149641  T
Q  462 tctcttt 468  Q
    |||||||    
T  33149640 tctcttt 33149634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 471
Target Start/End: Original strand, 16327904 - 16328008
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||| ||||||||||||| |||||||||||  | |||||| |||| ||||||| |||||||   ||| ||  | |||||| ||||||||||| |||    
T  16327904 taatgatagataaatatccttaggtggcaatacatccattgacacccacataaaaatctgacacgtgttcatgtgcacctcacacaagcacactttttct 16328003  T
Q  467 ttcat 471  Q
    |||||    
T  16328004 ttcat 16328008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 464
Target Start/End: Original strand, 14831835 - 14831914
Alignment:
Q  385 cttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttct 464  Q
    |||| |||||||||||| |||||||| |||| ||||||| |||||||   |||||| |||| | || |||||||||||||    
T  14831835 cttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttct 14831914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 474
Target Start/End: Complemental strand, 18520981 - 18520874
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| || | | || |||||||||||||||    
T  18520981 taatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 18520882  T
Q  467 ttcatctc 474  Q
    || |||||    
T  18520881 tttatctc 18520874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 468
Target Start/End: Original strand, 40145405 - 40145511
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | | ||||| |||||||||||| |||| ||||||||  |||||| |||||||   |||||| || | | || ||||||||||    
T  40145405 atgagtaatgatacatagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 40145504  T
Q  462 tctcttt 468  Q
    |||||||    
T  40145505 tctcttt 40145511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 474
Target Start/End: Complemental strand, 50052525 - 50052418
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||||||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| || | | || |||||||||||||||    
T  50052525 taatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 50052426  T
Q  467 ttcatctc 474  Q
    ||| ||||    
T  50052425 ttcctctc 50052418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 468
Target Start/End: Complemental strand, 11511559 - 11511458
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| |||||||||||| |||||||| |||| ||||||| |||||||   |||||| || | | || |||||||||||||||    
T  11511559 taatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 11511460  T
Q  467 tt 468  Q
    ||    
T  11511459 tt 11511458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 3481680 - 3481759
Alignment:
Q  390 gtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctctttc 469  Q
    ||||||||||||||||||||| ||||  |||||| ||||||    |||||| || | |||| ||||||||||||||||||    
T  3481680 gtggcaatacactctttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagcacactttctctttc 3481759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 29239889 - 29239996
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| ||||||||||||  ||||||||||||  |||||| | |||||   |||||| || | |||| |||||||||||||||    
T  29239889 taatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacactttctct 29239988  T
Q  467 ttcatctc 474  Q
    ||| ||||    
T  29239989 ttcctctc 29239996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 468
Target Start/End: Original strand, 6034047 - 6034148
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| |||||||||||| |||||||| ||||  |||||| ||||| |   |||||| |||| | || |||||||||||||||    
T  6034047 taatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttctct 6034146  T
Q  467 tt 468  Q
    ||    
T  6034147 tt 6034148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 468
Target Start/End: Complemental strand, 24995180 - 24995103
Alignment:
Q  391 tggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctcttt 468  Q
    ||||||||||| |||||||| |||| |||||||||||||||   |||||| || | | || ||||||| |||||||||    
T  24995180 tggcaatacaccctttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacattttctcttt 24995103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 468
Target Start/End: Original strand, 41236350 - 41236451
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| ||||||||||||  ||||||||||||  |||||| |||||||   |||||| || | | || |||||||||||||||    
T  41236350 taatgatacatagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 41236449  T
Q  467 tt 468  Q
    ||    
T  41236450 tt 41236451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 468
Target Start/End: Complemental strand, 48183146 - 48183045
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| || | | || |||||||||||||||    
T  48183146 taatgatacatagacacccttacgtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 48183047  T
Q  467 tt 468  Q
    ||    
T  48183046 tt 48183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 55475199 - 55475256
Alignment:
Q  372 atacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgaca 429  Q
    ||||||||| ||||||| |||||||||||| |||||||| ||||  |||||| |||||    
T  55475199 atacataaacatccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 55475256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 468
Target Start/End: Original strand, 19329840 - 19329946
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | ||||||| ||||||||||||  ||||||| ||||  |||||| |||||||  ||||||| || | | || ||||||||||    
T  19329840 atgagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactt 19329939  T
Q  462 tctcttt 468  Q
    |||||||    
T  19329940 tctcttt 19329946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 468
Target Start/End: Original strand, 3434565 - 3434666
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||||||| |||||||||||| |||||||| ||||  |||||  |||||||   |||||| |||| | || |||||||||||||||    
T  3434565 taatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacactttctct 3434664  T
Q  467 tt 468  Q
    ||    
T  3434665 tt 3434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 468
Target Start/End: Original strand, 7389392 - 7389493
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| ||||||||||||||||||||| ||||  |||||| |||||||   |||||| || | | || |||||||||||||||    
T  7389392 taatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 7389491  T
Q  467 tt 468  Q
    ||    
T  7389492 tt 7389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 16374883 - 16374814
Alignment:
Q  405 ttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctctttcatctc 474  Q
    |||||||||||  |||||| |||||||   |||||| ||||||||| |||||||| ||||||||||||||    
T  16374883 ttgacatccacacaaaaatctgacacgtggtcacgtggatctcacacaagcacacattctctttcatctc 16374814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 468
Target Start/End: Complemental strand, 19436284 - 19436183
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||||||| ||| ||||||||  ||||||| ||||  |||||| |||||||   |||||| |||| | ||||||||||||||||||    
T  19436284 taatgatacatagacatccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagcacactttctct 19436185  T
Q  467 tt 468  Q
    ||    
T  19436184 tt 19436183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 468
Target Start/End: Complemental strand, 8080480 - 8080379
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| |||||||||||| |||||||| | || ||||||| |||||||   |||||| || | | || |||||||||||||||    
T  8080480 taatgatacatagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 8080381  T
Q  467 tt 468  Q
    ||    
T  8080380 tt 8080379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 468
Target Start/End: Complemental strand, 36362010 - 36361909
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | | ||||| |||||||||||  |||||||| ||||  |||||| |||||||   |||||| || | |||| |||||||||||||||    
T  36362010 taatgatacatagacacccttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctct 36361911  T
Q  467 tt 468  Q
    ||    
T  36361910 tt 36361909  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 468
Target Start/End: Complemental strand, 27564837 - 27564731
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | ||||||| ||||||||||||  ||||||| ||||  |||||| |||||||  ||||||| || | | || ||||||||||    
T  27564837 atgagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactt 27564738  T
Q  462 tctcttt 468  Q
    |||||||    
T  27564737 tctcttt 27564731  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 474
Target Start/End: Complemental strand, 51898780 - 51898673
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||| | ||| ||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| |||| | || ||||||||||||| |    
T  51898780 taatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctat 51898681  T
Q  467 ttcatctc 474  Q
    ||| ||||    
T  51898680 ttcctctc 51898673  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 468
Target Start/End: Original strand, 3000322 - 3000423
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctct 466  Q
    |||| ||||||||| | ||||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| || | |  | |||||||||||||||    
T  3000322 taatgatacataaacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctct 3000421  T
Q  467 tt 468  Q
    ||    
T  3000422 tt 3000423  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 431
Target Start/End: Original strand, 37649196 - 37649265
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacg 431  Q
    |||| |||| ||||||| | ||| ||| ||||||||||||||||||||| ||||  |||||| |||||||    
T  37649196 atgagtaatgatacatagacatctttaggtggcaatacactctttgacacccacacaaaaatctgacacg 37649265  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 23597188 - 23597124
Alignment:
Q  367 taatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacg 431  Q
    |||| ||||||| | ||| ||| ||||||||||||||||||| | |||| ||||||| |||||||    
T  23597188 taatgatacatagacatcattaggtggcaatacactctttgatacccacataaaaatctgacacg 23597124  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 468
Target Start/End: Complemental strand, 31109480 - 31109396
Alignment:
Q  384 ccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctcttt 468  Q
    ||||| |||||||||||| |||||||||||||  |||||| |||||||   ||||||||| | | || ||| |||||||||||||    
T  31109480 ccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcacgtagaccccgcaaaagtacactttctcttt 31109396  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 473
Target Start/End: Complemental strand, 31953112 - 31953021
Alignment:
Q  382 atccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctctttcatct 473  Q
    ||||||| |||||||||||| | |||||| |||| ||||||| ||||| |   ||| || || |||||| || |||||||||||||||||||    
T  31953112 atccttaggtggcaatacaccccttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaaacacactttctctttcatct 31953021  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 468
Target Start/End: Original strand, 32869698 - 32869782
Alignment:
Q  384 ccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactttctcttt 468  Q
    ||||| |||||||||||| |||||||| ||||  |||||| |||||||   |||||| || | | || |||||||||||||||||    
T  32869698 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 32869782  T

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Target: scaffold1268 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 1031 - 919
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | ||| ||| |||||||||||| |||| ||||||||  |||||  |||||||   ||||||  ||| | || ||||||||||    
T  1031 atgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacactt 932  T
Q  462 tctctttcatctc 474  Q
    |||||||| ||||    
T  931 tctctttcctctc 919  T

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Target: scaffold1267 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 1031 - 919
Alignment:
Q  362 atgattaatcatacataaatatccttaagtggcaatacactctttgacatccacgtaaaaatttgacacgacatcacgtagatctcacataagcacactt 461  Q
    |||| |||| ||||||| | ||| ||| |||||||||||| |||| ||||||||  |||||  |||||||   ||||||  ||| | || ||||||||||    
T  1031 atgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacactt 932  T
Q  462 tctctttcatctc 474  Q
    |||||||| ||||    
T  931 tctctttcctctc 919  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 8945 - 8897
Alignment:
Q  382 atccttaagtggcaatacactctttgacatccacgtaaaaatttgacac 430  Q
    ||||||||||| ||||||||| ||||||||| ||  |||||||||||||    
T  8945 atccttaagtgacaatacactatttgacatctacacaaaaatttgacac 8897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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