View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_high_11 (Length: 324)
Name: NF18504_high_11
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 40842205 - 40841889
Alignment:
| Q |
8 |
cgaataatatgatttcatacaacatgttcaattaagagactcttcgattaaatatgtcgcaccatcatctcaatgtacaccagcaaaagtttatacatcc |
107 |
Q |
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| T |
40842205 |
cgaaaaatatgatttcatacaacatgttcaattaagagactcttcgattaaatatgtcacaccatcatctcaatgtacaccagcaaaagtttatacatcc |
40842106 |
T |
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| Q |
108 |
aatttgactttttataggtgctgcaccaattaaattaatattatcaaatactatgtttttgttgactaagttttcaaataatacttaaaaagataaattt |
207 |
Q |
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| T |
40842105 |
agtttgactttttataggtgctgcaccaattaaattaatattatcaaatactatgtttttgttgactaagttttcaaataatacttaaaaagataaattt |
40842006 |
T |
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| Q |
208 |
tattnnnnnnntaatataagttgacctaaattgaattcagnnnnnnnnaatccaaaccaatcaatacacgtggtttgatttagacaagtccataatatat |
307 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40842005 |
tattaaaaaaataatataagttgacctaaattgaattcaattttttttaatccaaaccaatcaatacacgtggtttgatttagacaagtccataatatat |
40841906 |
T |
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| Q |
308 |
ataagtaaaatttgttt |
324 |
Q |
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| T |
40841905 |
ataagtaaaatttgttt |
40841889 |
T |
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