View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_high_19 (Length: 243)
Name: NF18504_high_19
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 42943882 - 42944123
Alignment:
| Q |
2 |
atcataggtagtggtggaatgaattttcccccataatgtgggcctaaggaacccacaaaaggaaattagagtatgtagatgaagagacattaagattcca |
101 |
Q |
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| T |
42943882 |
atcatagatagtggtggaatgaattttcccccataatgtgggcctacggaacccacaaaaggaaattagagtatgtagatgaagagacattaagattcca |
42943981 |
T |
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| Q |
102 |
ttatgcgaacaaagtaacaatcatgactgcttggtgtatatatgctcttgtactcacaatgcccttcaaataaaaaataaaacagaagggaaaattaaag |
201 |
Q |
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| T |
42943982 |
ttatgcgaacaaagtaacaatcatgactgcttggtgtatatatgctcttgtactcacaatgcccttcaaataaaaaataaaacagaagggaaaattaaag |
42944081 |
T |
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| Q |
202 |
tataaaccttactctactagtctagtgatacttgatagcaat |
243 |
Q |
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| T |
42944082 |
tataaaccttactctactagtctagtgatacttgatagcaat |
42944123 |
T |
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