View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18504_high_20 (Length: 239)
Name: NF18504_high_20
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_high_20 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0024 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 69541 - 69321
Alignment:
| Q |
18 |
attttagatgccacttgagcccaccaaatttaattcaaagtgtgaccacatttttcttaataatagtagtaaatatagtggtaaatttattaggaaagga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69541 |
attttagatgccacttgagcccaccaaatttaattcaaagtgtgaccacatttttcttaataatagtagtaaatatagtggtaaatttattaggaaagga |
69442 |
T |
|
| Q |
118 |
gaaccttatcaaaccgccaccaggacattatcaaatttaattccattatggaatatggtatgtgttttcaagactctacatgcctattcttgttaggcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
69441 |
gaaccttatcaaaccgccaccaggacattatcaaatttaattccattatagaatatggtatgtgttttcaagactctacatgcctattcttattaggcaa |
69342 |
T |
|
| Q |
218 |
attagattattttgcatcttc |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
69341 |
attagattattttgcatcttc |
69321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 4741953 - 4741869
Alignment:
| Q |
155 |
taattccattatggaatatggtatgtgttttcaagactctacatgcctattcttgttaggcaaattagattattttgcatcttct |
239 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||||||||| ||||||||||| |||| |||| | |||| |||||||||||| |
|
|
| T |
4741953 |
taattccattatgggatacagtatgtgttttcgagactctacaggcctattcttgctaggaaaatcatattactttgcatcttct |
4741869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University