View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_high_21 (Length: 238)
Name: NF18504_high_21
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_high_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 45592875 - 45592661
Alignment:
| Q |
24 |
atataaataaaataagttcttacctcaagttttctcaattcagcttctttagcagctttcttactgttctcccatgctgttatggttgaaagtcttctct |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45592875 |
atataaataaaataagttcttacctcaagttttctcaattcagcttctttagcagctttcttactgttctcccatgctgttatggttgaaagtcttctct |
45592776 |
T |
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| Q |
124 |
gagctctgctcatcaaattcatgactcgatgtaataaggttctaaaaatttgaaaattaaacattagatggtgaaagctcttacttgttctctgcttttg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45592775 |
gagctctgctcatcaaattcatgactcgatgtaataaggttctaaaaatttgaaaattaaacattagatggtgaaagctcttacttgttctctgcttttg |
45592676 |
T |
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| Q |
224 |
acttttcactttctt |
238 |
Q |
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||||||||||||||| |
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| T |
45592675 |
acttttcactttctt |
45592661 |
T |
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