View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_high_5 (Length: 527)
Name: NF18504_high_5
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_high_5 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 28337 - 28834
Alignment:
| Q |
1 |
caacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28337 |
caacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaa |
28436 |
T |
|
| Q |
101 |
ataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttca |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28437 |
ataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttca |
28522 |
T |
|
| Q |
201 |
atgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctattttcttggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28523 |
atgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctattttcttggc |
28622 |
T |
|
| Q |
301 |
tattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagttataactctcattagttaatgatccttcctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28623 |
tattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagttataactctcattggttaatgatccttcctc |
28722 |
T |
|
| Q |
401 |
caacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaacttttcttttatgatgccgacttctgatatcc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28723 |
caacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaacttttcttttatgatgccgacttctgatatcc |
28822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 275447 - 275944
Alignment:
| Q |
1 |
caacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaa |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275447 |
caacttcatcagcgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaa |
275546 |
T |
|
| Q |
101 |
ataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttca |
200 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275547 |
ataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttca |
275632 |
T |
|
| Q |
201 |
atgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctattttcttggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275633 |
atgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctattttcttggc |
275732 |
T |
|
| Q |
301 |
tattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagttataactctcattagttaatgatccttcctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275733 |
tattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagttataactctcattagttaatgatccttcctc |
275832 |
T |
|
| Q |
401 |
caacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaacttttcttttatgatgccgacttctgatatcc |
500 |
Q |
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| T |
275833 |
caacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaacttttcttttatgatgccgacttctgatatcc |
275932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 26396051 - 26396549
Alignment:
| Q |
1 |
caacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396051 |
caacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaa |
26396150 |
T |
|
| Q |
101 |
ataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttca |
200 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396151 |
ataataatatgttaagaagtttgat--------------aaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttca |
26396236 |
T |
|
| Q |
201 |
atgccgctctttattctttt-cggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctattttcttgg |
299 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396237 |
atgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctattttcttgg |
26396336 |
T |
|
| Q |
300 |
ctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagttataactctcattagttaatgatccttcct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396337 |
ctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagttataactctcattagttaatgatccttcct |
26396436 |
T |
|
| Q |
400 |
ccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaacttttcttttatgatgccgacttctgatatc |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396437 |
ccaacaattgagaggcctttggatacaaacgatcatatctctctttcttcgaacaaatatcttcattaacttttcttttatgatgccgacttctgatatc |
26396536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 26460430 - 26460346
Alignment:
| Q |
181 |
ttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
265 |
Q |
| |
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||||||| |||||||| ||||| || ||||| ||||||||||| || |||||||| |||| || ||||||||||| |||||| |
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| T |
26460430 |
ttctcttacgacctctctcaatcccactcttgattcttttcggagctccttttgtgtttgctggtttaggatcaagtaatttctt |
26460346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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