View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_high_6 (Length: 506)
Name: NF18504_high_6
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 2112950 - 2113231
Alignment:
| Q |
16 |
cttcattcacggttaaaacatgatccattttgcattgaaaaagttgtgaagattctcatagaggaagttctatatagtgccgtcctcttactcttaggta |
115 |
Q |
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| T |
2112950 |
cttcattcaaggttaaaacatcacccatttttcattgaaaaagttgtgaagattctcatagaggaagttctatatagtgccgtcctcttactcttaggta |
2113049 |
T |
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| Q |
116 |
gggacgtagggtagtggcactgcagaagacagtggagagaaataaaggaaaatgaaaacctccactacaagacaaaaagtgacagatatataataaaatt |
215 |
Q |
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| T |
2113050 |
gggacgtagggtagtggcactgcagaagacagtggagagaaataaaggaaaatgaaaacctccactacaagacaaaaagtgacagatatataataaaatt |
2113149 |
T |
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| Q |
216 |
ggaccgaaagcaacagaacaaacaacttacggtcccacagttgtaccactttcacattcacatgtaccc-ttgtcctccaag |
296 |
Q |
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| T |
2113150 |
ggaccgaaagcaacacaacaaacaacttacggtcccacagttgtaccactttcacattcacatgtaccctttgtcctccaag |
2113231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 322 - 493
Target Start/End: Original strand, 2113233 - 2113403
Alignment:
| Q |
322 |
aattcaatagatacaataatatagttagttaaacttagaagttagatctctctcacagtcnnnnnnnntccgtaaccatgaccaaacatgagcatgaaac |
421 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| |
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| T |
2113233 |
aatttaatagatacaataatatagttagttaaacttagaagttagatctctctcacagtcaaaaaaaa-ctgtaaccatgaccaaacatgaacatgaaac |
2113331 |
T |
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| Q |
422 |
gccaccgtcaaaccgaacaaacctagcttcatgtttggtcgccaccgttttcttaatcttcattctcatcat |
493 |
Q |
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| T |
2113332 |
accaccgtcaaaccgaacaaacctagcttcatgtttggtcgccaccgttttcttaatcttcattctcatcat |
2113403 |
T |
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