View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18504_low_10 (Length: 459)

Name: NF18504_low_10
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18504_low_10
NF18504_low_10
[»] chr6 (9 HSPs)
chr6 (149-446)||(33965340-33965640)
chr6 (43-125)||(31899224-31899305)
chr6 (43-114)||(12336176-12336247)
chr6 (43-110)||(20564828-20564896)
chr6 (34-77)||(1309322-1309365)
chr6 (79-113)||(8460784-8460818)
chr6 (43-71)||(14373634-14373662)
chr6 (43-114)||(25739931-25740003)
chr6 (43-112)||(34316053-34316124)
[»] chr2 (7 HSPs)
chr2 (33-114)||(11002392-11002473)
chr2 (43-114)||(16238682-16238753)
chr2 (43-74)||(19177493-19177524)
chr2 (43-114)||(22670000-22670071)
chr2 (43-76)||(32417435-32417468)
chr2 (43-76)||(44472826-44472859)
chr2 (43-71)||(28252190-28252218)
[»] chr7 (5 HSPs)
chr7 (43-114)||(44521467-44521538)
chr7 (40-113)||(13851674-13851752)
chr7 (79-113)||(25021240-25021274)
chr7 (38-114)||(10427833-10427910)
chr7 (43-71)||(20574237-20574265)
[»] chr4 (4 HSPs)
chr4 (44-114)||(22197659-22197729)
chr4 (34-73)||(1391462-1391501)
chr4 (43-103)||(30898563-30898626)
chr4 (38-70)||(33393985-33394017)
[»] chr5 (3 HSPs)
chr5 (43-114)||(9064530-9064601)
chr5 (35-73)||(29215530-29215568)
chr5 (43-76)||(2680587-2680620)
[»] chr3 (6 HSPs)
chr3 (43-114)||(55339395-55339467)
chr3 (43-77)||(31644381-31644415)
chr3 (43-114)||(37268887-37268960)
chr3 (43-77)||(40969666-40969700)
chr3 (43-107)||(9325517-9325584)
chr3 (43-79)||(8753084-8753120)
[»] chr8 (2 HSPs)
chr8 (32-117)||(23636560-23636650)
chr8 (33-71)||(42747324-42747362)
[»] chr1 (5 HSPs)
chr1 (43-77)||(13383440-13383474)
chr1 (43-77)||(22174719-22174753)
chr1 (43-108)||(41936094-41936163)
chr1 (79-112)||(12503002-12503035)
chr1 (39-71)||(11771602-11771634)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 149 - 446
Target Start/End: Complemental strand, 33965640 - 33965340
Alignment:
Q  149 aacaagtcgaaatagagacaacaatttataggtaggaaaccgtgaaattagtctctaattaggtcaccgagtgctagagacgtcaaatttaagggctaan 248  Q
    ||||| ||||||||| ||||  |||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||     
T  33965640 aacaaatcgaaatagtgacataaatttagaggtaggaaaacgtgaaatcagtctctaattatgtcaccgagtgctagagacgacaaatttaagggctaat 33965541  T
Q  249 nnnnnnnnnat---gtttgtaattttcgtcgttatttcaactttttccggtaaaattttgtgaatgtgtagaacacttttcctcttcctgcgcctggagc 345  Q
              |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33965540 tttttttttttttcgtttgtaattttcgtcgttatttcaactttttccggtaaaattttgtgaatgtgtagaacacttttcctcttcctgcacctggagc 33965441  T
Q  346 aattggaaaacaagcagtagcatttagaatttcagcagacacagcatcattcttaggctgcaaatttttaggagcacaagatacactttatgatcatatt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||||||    
T  33965440 aattggaaaacaagcagtagcatttagaatttcagcagacacagcatcattcttagggtgtagatttttgggagcacaagatacactttatgatcatatt 33965341  T
Q  446 g 446  Q
    |    
T  33965340 g 33965340  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 31899305 - 31899224
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaattacacaaacca 125  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||   ||| |||||||| |||||| || |||||||    
T  31899305 ttttttgaacaagccaaaatgaaatatattaacaa-aatgattcatctcgtataagacgtgcaaatgagaatcacccaaacca 31899224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 12336247 - 12336176
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    |||||||||||||||||||||||||  || | ||  ||||||||||||||| ||||| ||||||||||||||    
T  12336247 ttttttgaacaagccaaaatgaaattaataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaat 12336176  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 20564828 - 20564896
Alignment:
Q  43 ttttttgaacaagccaaaatgaaat-atattaacaatagtgattcatctcgctcaaggcgtgcaaaaga 110  Q
    ||||||||||| ||||||||||||| |||||||||  ||||||||||||| |  |||||||||||||||    
T  20564828 ttttttgaacaggccaaaatgaaattatattaacacgagtgattcatctcacataaggcgtgcaaaaga 20564896  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 1309365 - 1309322
Alignment:
Q  34 tataatttattttttgaacaagccaaaatgaaatatattaacaa 77  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||    
T  1309365 tataatttttttttttaacaagccaaaatgagatatattaacaa 1309322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 8460818 - 8460784
Alignment:
Q  79 agtgattcatctcgctcaaggcgtgcaaaagagaa 113  Q
    ||||||||||||||| |||||||||||||||||||    
T  8460818 agtgattcatctcgcacaaggcgtgcaaaagagaa 8460784  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 14373662 - 14373634
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatat 71  Q
    |||||||||||||||||||||||||||||    
T  14373662 ttttttgaacaagccaaaatgaaatatat 14373634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 25739931 - 25740003
Alignment:
Q  43 ttttttgaacaagccaaaatgaaat-atattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    |||||| ||||| |||||||||||| | |||| ||   |||||||||||||| |||| |||||||||||||||    
T  25739931 tttttttaacaaaccaaaatgaaattaaattaccaccggtgattcatctcgcacaagacgtgcaaaagagaat 25740003  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 34316053 - 34316124
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatata--ttaacaatagtgattcatctcgctcaaggcgtgcaaaagaga 112  Q
    |||||| ||||| ||||||| |||||||  | ||||| |||||||||||||||  |||| ||||||||||||    
T  34316053 tttttttaacaaaccaaaataaaatataactcaacaaaagtgattcatctcgcaaaaggtgtgcaaaagaga 34316124  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 11002473 - 11002392
Alignment:
Q  33 atataatttattttttgaacaagccaaaatgaaat--atattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    ||||| |||||||||  ||||||||||||||||||  |||||| || |||||||||||||||| ||||||||||||||||||||    
T  11002473 atatattttattttt--aacaagccaaaatgaaatgtatattaccactagtgattcatctcgcacaaggcgtgcaaaagagaat 11002392  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 16238682 - 16238753
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    |||||| |||||||||||||||| | ||| | ||  ||||||||||||||| ||||| ||||||||||||||    
T  16238682 tttttttaacaagccaaaatgaattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaat 16238753  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 19177524 - 19177493
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaa 74  Q
    ||||||||||||||||||||||||||||||||    
T  19177524 ttttttgaacaagccaaaatgaaatatattaa 19177493  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 22670000 - 22670071
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    ||||||||||||||||||||||| | ||| | ||  ||||| | ||||||| ||||| ||||||||||||||    
T  22670000 ttttttgaacaagccaaaatgaattttataaccagaagtgagtaatctcgcacaaggtgtgcaaaagagaat 22670071  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 32417435 - 32417468
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaaca 76  Q
    |||||||||||||||||||||| |||||||||||    
T  32417435 ttttttgaacaagccaaaatgagatatattaaca 32417468  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 44472826 - 44472859
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaaca 76  Q
    ||||||||||||||||||||||| ||||||||||    
T  44472826 ttttttgaacaagccaaaatgaattatattaaca 44472859  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 28252190 - 28252218
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatat 71  Q
    |||||||||||||||||||||||||||||    
T  28252190 ttttttgaacaagccaaaatgaaatatat 28252218  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 44521467 - 44521538
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    ||||||||||||||||||||||| | ||| | ||  ||||||||||||||| ||||| ||||||||||||||    
T  44521467 ttttttgaacaagccaaaatgaattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaat 44521538  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 13851752 - 13851674
Alignment:
Q  40 ttattttttgaacaagccaaaatgaaatatatta----ac-aatagtgattcatctcgctcaaggcgtgcaaaagagaa 113  Q
    ||||||||||||||||||||||| ||||||||||    || || ||||||||||||||  ||||| |||||||||||||    
T  13851752 ttattttttgaacaagccaaaataaaatatattagatcacaaagagtgattcatctcgtacaaggtgtgcaaaagagaa 13851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 25021240 - 25021274
Alignment:
Q  79 agtgattcatctcgctcaaggcgtgcaaaagagaa 113  Q
    ||||||||||||||| |||||||||||||||||||    
T  25021240 agtgattcatctcgcacaaggcgtgcaaaagagaa 25021274  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 10427910 - 10427833
Alignment:
Q  38 atttattttttgaacaagccaaaatgaaat-atattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    |||| ||||||||| ||  ||||||||||| | || | ||| ||||||||||||||| ||||| ||||||||||||||    
T  10427910 attttttttttgaagaaatcaaaatgaaattaaatcaccaaaagtgattcatctcgcacaaggtgtgcaaaagagaat 10427833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 20574237 - 20574265
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatat 71  Q
    |||||||||||||||||||||||||||||    
T  20574237 ttttttgaacaagccaaaatgaaatatat 20574265  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 22197729 - 22197659
Alignment:
Q  44 tttttgaacaagccaaaatgaaatatattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    |||||||||||||||||| ||| | ||| | ||  ||||||||||||||| ||||| ||||||||||||||    
T  22197729 tttttgaacaagccaaaaagaattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaat 22197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 1391462 - 1391501
Alignment:
Q  34 tataatttattttttgaacaagccaaaatgaaatatatta 73  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  1391462 tataatttattttttgaacaagcaaaaatgaattatatta 1391501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 30898626 - 30898563
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatatt---aacaatagtgattcatctcgctcaaggcgtg 103  Q
    ||||||||||||| |||||||| |||||||   ||||| ||||||||| ||||| |||||||||    
T  30898626 ttttttgaacaagacaaaatgagatatattacaaacaacagtgattcacctcgcacaaggcgtg 30898563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 33394017 - 33393985
Alignment:
Q  38 atttattttttgaacaagccaaaatgaaatata 70  Q
    |||||||||||||||||||||| ||||||||||    
T  33394017 atttattttttgaacaagccaagatgaaatata 33393985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 9064530 - 9064601
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaata-gtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    ||||||||||||||||||||| ||| || |||| ||| |||||||||||||| ||| | ||||||||||||||    
T  9064530 ttttttgaacaagccaaaatggaat-taataaccataagtgattcatctcgcacaaagtgtgcaaaagagaat 9064601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 29215530 - 29215568
Alignment:
Q  35 ataatttattttttgaacaagccaaaatgaaatatatta 73  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  29215530 ataattttttttttgaacaagccaaaataaaatatatta 29215568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 2680587 - 2680620
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaaca 76  Q
    |||||| |||||||||||||||||||||||||||    
T  2680587 tttttttaacaagccaaaatgaaatatattaaca 2680620  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 55339395 - 55339467
Alignment:
Q  43 ttttttgaacaagccaaaatgaaat-atattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    ||||||||||||||||||||| ||| | |||| ||  ||| ||||||||||| ||||| ||||||||||||||    
T  55339395 ttttttgaacaagccaaaatgtaattaaattaccagaagtaattcatctcgcacaaggtgtgcaaaagagaat 55339467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 31644381 - 31644415
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaa 77  Q
    |||||||||||||||||||||| ||||||||||||    
T  31644381 ttttttgaacaagccaaaatgagatatattaacaa 31644415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 37268960 - 37268887
Alignment:
Q  43 ttttttgaacaagccaaaatgaaa--tatattaacaatagtgattcatctcgctcaaggcgtgcaaaagagaat 114  Q
    ||||| |||||||| |||||||||  ||||||| || | |||||||||||||| ||||||||||| | ||||||    
T  37268960 tttttggaacaagcaaaaatgaaacttatattaccactggtgattcatctcgcacaaggcgtgcagaggagaat 37268887  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 40969666 - 40969700
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaa 77  Q
    |||||||||||||||||||||| ||||||||||||    
T  40969666 ttttttgaacaagccaaaatgagatatattaacaa 40969700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 9325584 - 9325517
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatat---attaacaatagtgattcatctcgctcaaggcgtgcaaa 107  Q
    ||||||||||||| |||||||||||||   ||||||||   || |||||||||| |||||||||||||    
T  9325584 ttttttgaacaagtcaaaatgaaatataacattaacaacgatgtttcatctcgcacaaggcgtgcaaa 9325517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 8753084 - 8753120
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaata 79  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  8753084 ttttttgcacaagccaaaatgatatatattaacaata 8753120  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 23636560 - 23636650
Alignment:
Q  32 aatataatttattttttgaacaagccaaaatgaaatatattaa-----caatagtgattcatctcgctcaaggcgtgcaaaagagaattac 117  Q
    |||||| ||| ||||||||| ||| ||||||  ||||||||||     ||| ||||||||||||||  ||||| |||||||||||||||||    
T  23636560 aatatatttttttttttgaagaagtcaaaatagaatatattaaatcaccaagagtgattcatctcgtacaaggtgtgcaaaagagaattac 23636650  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 42747362 - 42747324
Alignment:
Q  33 atataatttattttttgaacaagccaaaatgaaatatat 71  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  42747362 atatatttttttttttgaacaagccaaaatgaaatatat 42747324  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 13383440 - 13383474
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaa 77  Q
    |||||||||||||||||||||| ||||||||||||    
T  13383440 ttttttgaacaagccaaaatgagatatattaacaa 13383474  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 22174719 - 22174753
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatattaacaa 77  Q
    |||||||||||||||||||||| ||||||||||||    
T  22174719 ttttttgaacaagccaaaatgagatatattaacaa 22174753  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 41936163 - 41936094
Alignment:
Q  43 ttttttgaacaagccaaaatgaaatatatta-----acaatagtgattcatctcgctcaaggcgtgcaaaa 108  Q
    |||||||||||||||||| || |||||||||     || ||||||||||||||||| ||||||||||||||    
T  41936163 ttttttgaacaagccaaa-tgcaatatattatatcaacgatagtgattcatctcgcacaaggcgtgcaaaa 41936094  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 12503002 - 12503035
Alignment:
Q  79 agtgattcatctcgctcaaggcgtgcaaaagaga 112  Q
    ||||||||||||||| ||||||||||||||||||    
T  12503002 agtgattcatctcgcacaaggcgtgcaaaagaga 12503035  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 11771634 - 11771602
Alignment:
Q  39 tttattttttgaacaagccaaaatgaaatatat 71  Q
    ||||||||||||| |||||||||||||||||||    
T  11771634 tttattttttgaaaaagccaaaatgaaatatat 11771602  T

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