View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_low_11 (Length: 429)
Name: NF18504_low_11
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 42300665 - 42301076
Alignment:
| Q |
18 |
gaattattctttgaaattgtgtttgaattgaatccttttattagtgttatgaaatttagggtttatattatattatttgcggttgtgatttagttatctt |
117 |
Q |
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| T |
42300665 |
gaattattctttgaaattgtgtttgaattgaatccttttattagtgttatgaaatttagggtttatattatattatttgcggttgtgatttagttatctt |
42300764 |
T |
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| Q |
118 |
aaatgcgcgatgtacctcggtgaatattgcacttagaagtatttaatattttgagaataataacaaaatgtagcttatttggaagattattggaagggtt |
217 |
Q |
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| T |
42300765 |
aaatgcgcgatgtaccttggtgaatattgcacttagaagtatttaatattttgagaataataacaaaatgtagcttatttggaagattataggaagggtt |
42300864 |
T |
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| Q |
218 |
tgttcatattgtattattctcttgaattgcatattttattgctggctgtatggtttatacgttatttgtggttgtgatttagttgtcttaaatgcgattt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42300865 |
tgttcatattgtattattctcttgaattgcatattttattgctggctgtatggtttatacgttatttgtggttgtgatttagttgtcttaaatgccattt |
42300964 |
T |
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| Q |
318 |
gtacttccagtgatcgctgcacttgagtttgaacggcagaatgcaaggacgtggtggtgggcctggtggtagggatcctttctctggcgggcctttcggt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42300965 |
gtacttccagtgatcgctgcacttgagtttgaacggcagaatgcaaggacgtggtggtgggcctggtggtagggatcctttctctggcgggcctttcggt |
42301064 |
T |
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| Q |
418 |
ggttttggaggc |
429 |
Q |
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| T |
42301065 |
ggttttggaggc |
42301076 |
T |
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