View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18504_low_13 (Length: 396)
Name: NF18504_low_13
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_low_13 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 6943766 - 6944144
Alignment:
| Q |
18 |
gtaacggtgttttttgtctcaaaggtttgtgtttgtataatagttgtgtaaatgagttagccatctttaacccgacaactagagaggtccttcgtatccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
6943766 |
gtaacggtgttttttgtctcaaaggtttctgttggtataatagttgtgtaaatgagttagccatcttgaacccgacaactagagaggtccatcgtatccc |
6943865 |
T |
|
| Q |
118 |
tcacacctgctacctcagtaatggatcatacttgtatggtttcggtgctgatgattccaacatcatcgatttcaaagttgtgaaactctgtatcaataat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6943866 |
tcacacctgctacctcagtaatggatcatacttgtatggtttcggtgctgatgattccaacatcatcgatttcaaagttgtgaaactctgtatcaataat |
6943965 |
T |
|
| Q |
218 |
cattggagaaaacacaaactttatgtttcatcagcggaagtttatagtctaatcactaaatcatggacccctacccgacatcctcctcctcctttaacta |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6943966 |
cattggagaaaacacaaactttctgtttcatcagcggaagtttatagtctaatcactaaatcatggacccctacccgacatcctcctcctccttttacta |
6944065 |
T |
|
| Q |
318 |
tcatcacacgtcaatgtcccttcaaatataacactcttgttaacggcgtttatcattggattacaaaaaattcattcta |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6944066 |
tcatcacacgtcaatgtcccttcaaatataacactcttgttaacggcgtttatcattggattacaaaaaattcattcta |
6944144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 395
Target Start/End: Complemental strand, 7475263 - 7475027
Alignment:
| Q |
150 |
tgtatggtttcggtgctgatgattccaacatcatcgatttcaaagttgtgaaactctgtatcaataatcattggagaaaacacaaactttatgtttcatc |
249 |
Q |
| |
|
|||||||||| ||||| |||||| | |||||||| ||||||||||||||||||||| | |||| || | ||||| | ||| |||| |||||| |
|
|
| T |
7475263 |
tgtatggttttggtgcagatgatccaaacatcattgatttcaaagttgtgaaactccatgtcaagtattac--gagaagaaaca----ttatatttcatg |
7475170 |
T |
|
| Q |
250 |
agcggaagtttatagtctaatcactaaatcatggacccctacccgacatcctcctcctcctttaactatcatcacacgtcaatgtcccttcaaatataac |
349 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||| |||||||| || |||||||||||||| || ||||| |||||||||| |
|
|
| T |
7475169 |
ggcggaagtttatagtctaggtactaaatcatggactcctaccctacatgctcctcct---tttactatcatcacacgaaaaattccctccaaatataac |
7475073 |
T |
|
| Q |
350 |
actcttgttaacggcgtttatcattggattacaaaaaattcattct |
395 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
7475072 |
aatcttgttaacggcatttatcattggattacaaacaatgcattct |
7475027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 251 - 382
Target Start/End: Complemental strand, 7495516 - 7495388
Alignment:
| Q |
251 |
gcggaagtttatagtctaatcactaaatcatggacccctacccgacatcctcctcctcctttaactatcatcacacgtcaatgtcccttcaaatataaca |
350 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||||||| | |||||||| |||| |||||||||||||| |||||| |||| | ||||| |||| |
|
|
| T |
7495516 |
gcggaagtttataatctaagtactaaattatggacccctactcaacatcctcatcct---ttaactatcatcacgcgtcaacgtccttctaaatacaaca |
7495420 |
T |
|
| Q |
351 |
ctcttgttaacggcgtttatcattggattaca |
382 |
Q |
| |
|
|||||||||| || |||||||||||||||||| |
|
|
| T |
7495419 |
ctcttgttaatggtgtttatcattggattaca |
7495388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 7873385 - 7873438
Alignment:
| Q |
343 |
atataacactcttgttaacggcgtttatcattggattacaaaaaattcattcta |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
7873385 |
atataacactcttgttaacggcgtttatcattggattacagacaattcactcta |
7873438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 7488000 - 7487921
Alignment:
| Q |
301 |
tcctcctcctttaactatcatcacacgtcaatgtcccttcaaatataacactcttgttaacggcgtttatcattggatta |
380 |
Q |
| |
|
||||| |||||| |||| |||||||| |||||||| | || ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7488000 |
tcctcttccttttactaagatcacacgccaatgtccgtccagatataacactcttgttaacaccgtttatcattggatta |
7487921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 7488133 - 7488078
Alignment:
| Q |
150 |
tgtatggtttcggtgctgatgattccaacatcatcgatttcaaagttgtgaaactc |
205 |
Q |
| |
|
|||||||||||||||| |||||| |||||| |||| | |||||||||||||||||| |
|
|
| T |
7488133 |
tgtatggtttcggtgccgatgatcccaacaacatcaacttcaaagttgtgaaactc |
7488078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 31103727 - 31103691
Alignment:
| Q |
347 |
aacactcttgttaacggcgtttatcattggattacaa |
383 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
31103727 |
aacactcttgttaacggtgtttattattggattacaa |
31103691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University