View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_low_17 (Length: 300)
Name: NF18504_low_17
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 25977331 - 25977056
Alignment:
| Q |
16 |
aattacagcagcaaactacatggatttctacaacaacaaatccaaatccttaaaataagtcataattattgttttattttaattttaatgaaatcaatat |
115 |
Q |
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| T |
25977331 |
aattacagcggcaaactacatggatttctacaacaacaaatccaaatccttaaagtaagtcatagttattgttttattttcattttaatgaaatcaatat |
25977232 |
T |
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| Q |
116 |
taatcttgttattgatctaactttgtcacatcaattttatagagccagcatcatcattgccgttatcgtaaatacacaatgtagtacaactgtaaaaagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25977231 |
taatcttgttattgatctaactttgtcacatcaattttatagag-catcatcatcattgtcgttatcgtaaatacacaatgtagtacaactgtaaaaagt |
25977133 |
T |
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| Q |
216 |
tgtaagaagttcaacacgcaatcaactttaatgagtctcgcaaaagctcacgttttttgtgaaacttggttccctat |
292 |
Q |
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| T |
25977132 |
tgtaagaagttcaacacgcaatcaactttaatggttctcgcaaaagctcacgttttttgtgaaacttggttccctat |
25977056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 25963119 - 25962849
Alignment:
| Q |
16 |
aattacagcagcaaactacatggatttctacaacaacaaatccaaatccttaaaataagtcataattattgttttattttaattttaatgaaatcaatat |
115 |
Q |
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||||||||| |||||||||||||||||||||| | | |||||||||| ||| |||||||| || ||||||| |||| | ||||||||| ||| |
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| T |
25963119 |
aattacagcgtcaaactacatggatttctacaagatgagatccaaatcccaaaagtaagtcattgttgttgttttctttt-----tgatgaaatcagtat |
25963025 |
T |
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| Q |
116 |
taatcttgttattgatctaactttgtcacatcaattttatagagccagcatcatcattgccgttatcgtaaatacacaatgtagtacaactgtaaaaagt |
215 |
Q |
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| T |
25963024 |
taatcttgttattgacttaactttatcacatcaattttatcaagc-atcatgatcattgtcgttatcgtaaatacacaatgtagtataactgtagaaagt |
25962926 |
T |
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| Q |
216 |
tgtaagaagttcaacacgcaatcaactttaatgagtctcgcaaaagctcacgttttttgtgaaacttggttccctat |
292 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |
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| T |
25962925 |
tgtaagaagttttacacgcaatcaactttaatgattctcgcaaaagctcacattttttgtgaaacttgattccctat |
25962849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 25962758 - 25962634
Alignment:
| Q |
168 |
atcattgccgttatcgtaaatacacaatgtagtacaactgtaaaaagttgtaagaagttcaacacgcaatcaactttaatgagtctcgcaaaagctcacg |
267 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
25962758 |
atcattgtcgttatcgtaaatacacaatgtagtacaactataaaaagttgtaagaagttcaacacgcaatcaactttaatgattctcgcaaaatctcacg |
25962659 |
T |
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| Q |
268 |
ttttttgtgaaacttggttccctat |
292 |
Q |
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||||||||||||||| |||||||| |
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| T |
25962658 |
ctttttgtgaaacttgattccctat |
25962634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 25962545 - 25962421
Alignment:
| Q |
168 |
atcattgccgttatcgtaaatacacaatgtagtacaactgtaaaaagttgtaagaagttcaacacgcaatcaactttaatgagtctcgcaaaagctcacg |
267 |
Q |
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||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||| | |||||||||||||||| |
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| T |
25962545 |
atcattgtcgttatcgtaaatacacagtgtagtacaactataaaaagttgtaagaagttttacacttaatcaactttaataattctcgcaaaagctcact |
25962446 |
T |
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| Q |
268 |
ttttttgtgaaacttggttccctat |
292 |
Q |
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||||||||||||||| |||||||| |
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| T |
25962445 |
gtttttgtgaaacttgattccctat |
25962421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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