View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_low_19 (Length: 273)
Name: NF18504_low_19
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 25424844 - 25424584
Alignment:
| Q |
13 |
atcttcctacagcaccggattgtgttaaaaaacaagaacttgatatggtaaatgctcaatgattagtttctagtttgctatagttactcaaactcccatg |
112 |
Q |
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| T |
25424844 |
atcttcctacagcaccggattatgttaaaaaacaagaacttgatatggtaaatgctcaatgattagtttctagtttgctatagttactctaactcccatg |
25424745 |
T |
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| Q |
113 |
gatggatttacattaatgccaaaatgacaacagttcaaggatgagtacaatttttcatttatcatgcatctcatttgacttaaatatgctggaatgtatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
25424744 |
gatggatttacattaatgccaaaatgacaacagttcaaggatgagtacaattttgcatttatcatgcatctcatttgactttaataagctggaatgtatt |
25424645 |
T |
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| Q |
213 |
tccttaactttagaggtccaagatcctaaccataagttttgtgggttgtatctcctttact |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25424644 |
tccttaactttagaggtccaagatcctaaccataagttttgtgggttgtatctcctttact |
25424584 |
T |
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