View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18504_low_2 (Length: 668)

Name: NF18504_low_2
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18504_low_2
NF18504_low_2
[»] chr5 (3 HSPs)
chr5 (158-650)||(16957957-16958447)
chr5 (8-88)||(16957807-16957887)
chr5 (393-596)||(19456742-19456949)
[»] chr4 (3 HSPs)
chr4 (393-637)||(43055805-43056048)
chr4 (409-596)||(45571339-45571529)
chr4 (393-559)||(28721818-28721989)
[»] chr7 (3 HSPs)
chr7 (400-592)||(15909808-15909997)
chr7 (508-596)||(46664792-46664882)
chr7 (394-460)||(29139842-29139908)
[»] chr2 (4 HSPs)
chr2 (466-596)||(39867283-39867415)
chr2 (466-596)||(43832732-43832864)
chr2 (495-591)||(1937033-1937133)
chr2 (395-460)||(38431996-38432060)
[»] chr1 (3 HSPs)
chr1 (495-596)||(30036629-30036732)
chr1 (495-637)||(10870953-10871096)
chr1 (400-460)||(30036749-30036808)
[»] chr3 (2 HSPs)
chr3 (430-650)||(21505648-21505872)
chr3 (495-631)||(36118762-36118899)
[»] chr8 (4 HSPs)
chr8 (397-488)||(24347691-24347782)
chr8 (507-597)||(36199887-36199978)
chr8 (541-594)||(5175782-5175836)
chr8 (419-475)||(8495386-8495442)


Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 158 - 650
Target Start/End: Original strand, 16957957 - 16958447
Alignment:
Q  158 gtttctttgtataaatgctgcagtggtagtgatcagatactgtaccctagtatattaagcaggtactcctaaccaatgtttaaaaaaccggaacagaccg 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  16957957 gtttctttgtataaatgctgcagtggtagtgatcagatactgtaccctagtatattaagcgggtactcctaaccaatgtttaaaaaa--ggaacagaccg 16958054  T
Q  258 gattgtttaaccggctggccagtaatcggggctgtttccggtccggacatctgtacaaaacaggtagtcagttaaaccggaaaaagcccgtaaaaactgg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16958055 gattgtttaaccggctggccagtaatcggggctgtttccggtccggacatctgtacaaaacaggtagtcagttaaaccggaaaaagcccgtaaaaactgg 16958154  T
Q  358 tttaaaccgtccgaaaccgtactaaccggacagggtttagtgactagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgca 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16958155 tttaaaccgtccgaaaccgtactaaccggacagggtttagtgactagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgca 16958254  T
Q  458 aggcatcatcttcattgtatgcctttggtatattttgtttcaatcctattatcccattcaattgataataacaaagatattcaaagaattcttcttttct 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16958255 aggcatcatcttcattgtatgcctttggtatattttgtttcaatcctattatcccattcaattgataataacaaagatattcaaagaattcttcttttct 16958354  T
Q  558 caattttgctgatcaatctttattctagttagaatcattatcgtgtgtatccatttcagcccgattttgggaatactttctataccaaaagaa 650  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16958355 caattttgctgatcaatctttattctagttagaatcattatcgtgtgtatccatttcagcccgattttgggaatactttctataccaaaagaa 16958447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 16957807 - 16957887
Alignment:
Q  8 cgaagaatattttgtagtctggcatgatttttatttttcatttgaattatatatattgagaaaataaatacaaagtactat 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16957807 cgaagaatattttgtagtctggcatgatttttatttttcatttgaattatatatattgagaaaataaatacaaagtactat 16957887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 393 - 596
Target Start/End: Original strand, 19456742 - 19456949
Alignment:
Q  393 tttagtgactagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgcaaggc---atcatcttcattgtatgcctttggtata 489  Q
    ||||||||||| | |||| |||||| |||||||||  ||||||||| |||| ||||||| ||||||||    |||||||||||||||  ||||| ||||     
T  19456742 tttagtgactaaagaatgttctagtgtgaaaggagcgtgctcctttagggt-agccttgagtgcaaggttgtatcatcttcattgtaaaccttttgtatc 19456840  T
Q  490 ttttgtttcaatcctattatcccattcaattgataataaca--aagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagtt 587  Q
    ||   |||||||||||||||||||||||||||||  |||||  ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||  ||    
T  19456841 ttcactttcaatcctattatcccattcaattgatggtaacagaaagatattcaaagaattcttcatttctcaattttgttgatgaatctttattcttatt 19456940  T
Q  588 agaatcatt 596  Q
    | |||||||    
T  19456941 aaaatcatt 19456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 393 - 637
Target Start/End: Complemental strand, 43056048 - 43055805
Alignment:
Q  393 tttagtgactagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgcaaggc-atcatcttcattgtatgcctttggtatatt 491  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||  |||||||  |||||||||||||||  ||||| |||| ||    
T  43056048 tttagtgactagacaatgctctagtgtgaaaggagagtgctcctttggggt-agccttgaatgcaaggttatcatcttcattgtacaccttttgtatctt 43055950  T
Q  492 ttgtttcaatcctattatcccattcaattgataataaca--aagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttag 589  Q
     | |||||||||||||||||||||||||||||| |||||  ||||||||||||   | |||||||||||||||||| | |||||||||||||||||||||    
T  43055949 ctctttcaatcctattatcccattcaattgatagtaacagaaagatattcaaa---tccttcttttctcaattttgtttatcaatctttattctagttag 43055853  T
Q  590 aatcattatcgtgtgtatccatttcagcccgattttgggaatactttc 637  Q
    ||||||| || | | ||| |||||| ||||  |||||||||| |||||    
T  43055852 aatcattctcttatttattcatttctgcccagttttgggaattctttc 43055805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 409 - 596
Target Start/End: Complemental strand, 45571529 - 45571339
Alignment:
Q  409 tgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgcaaggc-atcatcttcattgtatgcctttggtatattttgtttcaatcctatt 507  Q
    ||||||| | |||||||||| |||||||||| ||| ||||||  ||||||||  ||||| |||||||||  | ||  |||| || | ||| |||  ||||    
T  45571529 tgctctaatgtgaaaggagagtgctcctttgaggt-agccttaagtgcaaggttatcatattcattgtaaacattctgtatcttctctttaaataatatt 45571431  T
Q  508 atcccattcaattgataataaca--aagatattcaaagaat-tcttcttttctcaattttgctgatcaatctttattctagttagaatcatt 596  Q
    ||||||||||||||||  |||||  |||||||| ||| ||  ||||||||||||||||||| ||||||||||| || ||||||||| |||||    
T  45571430 atcccattcaattgatggtaacagaaagatattgaaaaaaaatcttcttttctcaattttgttgatcaatcttcatcctagttagagtcatt 45571339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 559
Target Start/End: Complemental strand, 28721989 - 28721818
Alignment:
Q  393 tttagtgactagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgcaa-ggcatcatcttcattgtatgcc---tttggtat 488  Q
    ||||||| || || ||||||||||| |||||||||| |||| |||||||| |||||||| |||||| |  |||||||||||||||| ||   |||  |||    
T  28721989 tttagtgcctcgagaatgctctagtgtgaaaggagagtgcttctttgggg-tagccttgagtgcaacgttatcatcttcattgtatacctttttttatat 28721891  T
Q  489 attttgtttcaatcctattatcccattcaattgataataac--aaagatattcaaagaattcttcttttctca 559  Q
     || | || |||| |||||||| |||| |||||||| ||||  | ||||||| | ||||||||||||||||||    
T  28721890 cttctcttacaattctattatctcattaaattgatagtaacagagagatattaacagaattcttcttttctca 28721818  T

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Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 400 - 592
Target Start/End: Original strand, 15909808 - 15909997
Alignment:
Q  400 actagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgcaaggc-atcatcttcattgtatgcctttggtatattttgtttc 498  Q
    |||||| |||||||||||  ||  ||||| |||||| ||||||| ||||||| ||||||||  ||| ||||||||  |  ||||| |||| || ||||||    
T  15909808 actagagaatgctctagt--gaggggagagtgctcccttggggt-agccttgagtgcaaggttatcttcttcattacaaaccttttgtatcttctgtttc 15909904  T
Q  499 aatcctattatcccattcaattgataataac--aaagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaat 592  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||||||   |||||||| |||||||| |||||||||||||| |||||||||||    
T  15909905 aatcctatcatcccattcaattgataataacagaaagatattcaaagaa---ttcttttcacaattttgttgatcaatctttatcctagttagaat 15909997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 596
Target Start/End: Original strand, 46664792 - 46664882
Alignment:
Q  508 atcccattcaattgataataaca--aagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaatcatt 596  Q
    |||||||||| |||||| |||||  |||||||||| ||||||  |||||| ||||||||  ||| ||||||||||||||||||||||||||    
T  46664792 atcccattcagttgatagtaacagaaagatattcatagaattaatcttttgtcaattttattgaacaatctttattctagttagaatcatt 46664882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 460
Target Start/End: Complemental strand, 29139908 - 29139842
Alignment:
Q  394 ttagtgactagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgcaagg 460  Q
    |||||||||||| |||||||| || |||||||||| ||||||||| | | ||||| || ||||||||    
T  29139908 ttagtgactagagaatgctctggtgtgaaaggagagtgctcctttagaggtagccatgagtgcaagg 29139842  T

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Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 466 - 596
Target Start/End: Complemental strand, 39867415 - 39867283
Alignment:
Q  466 tcttcattgtatgcctttggtatattttgtttcaatcctattatcccattcaattgataataaca--aagatattcaaagaattcttcttttctcaattt 563  Q
    |||||||| ||  ||||| |||| || | |||||||||||||||||||||||| || || ||| |  |||||||| ||||||||||||||||||||||||    
T  39867415 tcttcattataaaccttttgtatcttctctttcaatcctattatcccattcaactgttagtaagagaaagatattgaaagaattcttcttttctcaattt 39867316  T
Q  564 tgctgatcaatctttattctagttagaatcatt 596  Q
     | ||||||||||||||||||||||||||||||    
T  39867315 cgttgatcaatctttattctagttagaatcatt 39867283  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 466 - 596
Target Start/End: Complemental strand, 43832864 - 43832732
Alignment:
Q  466 tcttcattgtatgcctttggtatattttgtttcaatcctattatcccattcaattgataataaca--aagatattcaaagaattcttcttttctcaattt 563  Q
    |||||||| ||  ||||| |||| || | |||||||||||||||| ||||||| || || ||| |  |||||||| ||||||||||||||||||||||||    
T  43832864 tcttcattataaaccttttgtatcttctctttcaatcctattatcacattcaactgttagtaagagaaagatattgaaagaattcttcttttctcaattt 43832765  T
Q  564 tgctgatcaatctttattctagttagaatcatt 596  Q
     | ||||||||||||||||||||||||||||||    
T  43832764 cgttgatcaatctttattctagttagaatcatt 43832732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 591
Target Start/End: Original strand, 1937033 - 1937133
Alignment:
Q  495 tttcaatcct-attatccc-attcaattgataataaca--aagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttaga 590  Q
    |||||||||| |||||||| |||||||||| | |||||  ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  1937033 tttcaatccttattatccccattcaattgacagtaacagaaagatattcaaagaactcttcgtttctcaattttgttgatcaatctttattctagttaga 1937132  T
Q  591 a 591  Q
    |    
T  1937133 a 1937133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 38431996 - 38432060
Alignment:
Q  395 tagtgactagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgcaagg 460  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||    
T  38431996 tagtgactagagaatgctctagtgtgaaaggagactgctcctttgggg-tagccttgtgtgcaagg 38432060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 495 - 596
Target Start/End: Complemental strand, 30036732 - 30036629
Alignment:
Q  495 tttcaatcctattatcccattcaattgataataaca--aagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaat 592  Q
    |||||||||||| ||||||||||||||||  |||||  |||| |||||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  30036732 tttcaatcctataatcccattcaattgatggtaacagaaagaaattcaaagaattcttcttttctcaatttttttgatcaatctttattctatttagaat 30036633  T
Q  593 catt 596  Q
    ||||    
T  30036632 catt 30036629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 637
Target Start/End: Original strand, 10870953 - 10871096
Alignment:
Q  495 tttcaatcctattatcccattcaattgataataacaaagat--attcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaat 592  Q
    |||||||||||| ||| |||||||| |||||||||||| ||  ||||||| |||||||||||||||||||||  ||||||||||||||| ||||| ||||    
T  10870953 tttcaatcctat-atctcattcaatcgataataacaaaaatttattcaaaaaattcttcttttctcaattttattgatcaatctttattttagttggaat 10871051  T
Q  593 cattatcgtgtgtatccatttcagcccgattttgggaatactttc 637  Q
     ||| || ||| ||| |||||| |||   |||||||||| |||||    
T  10871052 tattctcttgtttattcatttctgccaagttttgggaattctttc 10871096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 460
Target Start/End: Complemental strand, 30036808 - 30036749
Alignment:
Q  400 actagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgcaagg 460  Q
    |||||| |||| |||||||||||| |||| ||||||||||||| |||||||| ||||||||    
T  30036808 actagagaatgatctagtatgaaaagagagtgctcctttgggg-tagccttgagtgcaagg 30036749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 430 - 650
Target Start/End: Complemental strand, 21505872 - 21505648
Alignment:
Q  430 tgctcctttggggttagccttgtgtgcaaggc-atcatcttcattgtatgcctttggtatattttgtttcaatcctattatcccattcaattgataata- 527  Q
    ||||| |||||||| ||||||| ||||||||  |||||||||||||||  ||||| |||| || | || ||||||||| || ||| |  |||| || ||     
T  21505872 tgctcatttggggt-agccttgagtgcaaggttatcatcttcattgtaaacctttcgtatcttctcttgcaatcctatcataccaatatattggtagtaa 21505774  T
Q  528 -acaaagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaatcattatcgtgtgtatccatttcagcccgattttg 626  Q
     | ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |||||| ||| |   || ||| |||||| ||||  |||||    
T  21505773 gaaaaagatattcaaataattcttcttttctcaattttgttgatcaacctttattctagctagaattattctgcagtttattcatttctgcccagttttg 21505674  T
Q  627 ggaatactttc--tataccaaaagaa 650  Q
    ||||| |||||  |||||||||||||    
T  21505673 ggaattctttccatataccaaaagaa 21505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 495 - 631
Target Start/End: Original strand, 36118762 - 36118899
Alignment:
Q  495 tttcaatcctattatcccattcaattgataataacaaaga--tattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaat 592  Q
    |||||||||||| ||| |||||||| |||||||||||| |  |||||||| |||||||||||||||||||||  ||||||||||||||| ||||| ||||    
T  36118762 tttcaatcctat-atctcattcaatcgataataacaaaaagttattcaaaaaattcttcttttctcaattttattgatcaatctttattttagttggaat 36118860  T
Q  593 cattatcgtgtgtatccatttcagcccgattttgggaat 631  Q
     ||| || ||| ||| |||||| |||   ||||||||||    
T  36118861 tattctcttgtttattcatttctgccaagttttgggaat 36118899  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 397 - 488
Target Start/End: Original strand, 24347691 - 24347782
Alignment:
Q  397 gtgactagacaatgctctagtatgaaaggagaatgctcctttggggttagccttgtgtgcaaggc-atcatcttcattgtatgcctttggtat 488  Q
    ||||||||| |||  |||||| |||||||||| |||||| ||||||| ||||||||||||||||  ||||||||||||||| |||||| ||||    
T  24347691 gtgactagagaattatctagtgtgaaaggagagtgctccattggggt-agccttgtgtgcaaggttatcatcttcattgtaagccttttgtat 24347782  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 597
Target Start/End: Original strand, 36199887 - 36199978
Alignment:
Q  507 tatcccattcaattgataataaca-aagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaatcatta 597  Q
    ||||||||||||||||| | |||| |||||||  |||||| | ||||||||||||||||  ||||||||| | |||||| |||||| |||||    
T  36199887 tatcccattcaattgatcaaaacacaagatatcaaaagaaattttcttttctcaattttattgatcaatcatcattctaattagaaccatta 36199978  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 594
Target Start/End: Complemental strand, 5175836 - 5175782
Alignment:
Q  541 aagaattcttc-ttttctcaattttgctgatcaatctttattctagttagaatca 594  Q
    ||||||||||| ||||||||||| || |||||||| ||||||||||||| |||||    
T  5175836 aagaattcttccttttctcaattatgttgatcaatatttattctagttaaaatca 5175782  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 475
Target Start/End: Complemental strand, 8495442 - 8495386
Alignment:
Q  419 tgaaaggagaatgctcctttggggttagccttgtgtgcaagg-catcatcttcattgt 475  Q
    |||||||||| ||||||||||||| |||||||||||| ||||  ||||||||||||||    
T  8495442 tgaaaggagagtgctcctttgggg-tagccttgtgtggaaggttatcatcttcattgt 8495386  T

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