View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18504_low_20 (Length: 267)

Name: NF18504_low_20
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18504_low_20
NF18504_low_20
[»] scaffold0024 (1 HSPs)
scaffold0024 (13-267)||(69051-69305)
[»] chr3 (1 HSPs)
chr3 (33-247)||(4741607-4741821)
[»] chr2 (4 HSPs)
chr2 (13-247)||(37670706-37670940)
chr2 (47-101)||(10748046-10748100)
chr2 (47-101)||(36756987-36757041)
chr2 (47-92)||(14786012-14786057)
[»] chr1 (3 HSPs)
chr1 (13-215)||(38598909-38599111)
chr1 (47-157)||(8672616-8672726)
chr1 (47-101)||(39501121-39501175)
[»] chr4 (6 HSPs)
chr4 (87-247)||(33708564-33708723)
chr4 (48-161)||(44550236-44550349)
chr4 (50-152)||(11583367-11583469)
chr4 (47-101)||(42327933-42327987)
chr4 (48-156)||(1480972-1481080)
chr4 (47-93)||(32499550-32499596)
[»] chr8 (5 HSPs)
chr8 (47-101)||(11629496-11629550)
chr8 (47-101)||(9180761-9180815)
chr8 (47-101)||(34752720-34752774)
chr8 (58-129)||(5792125-5792196)
chr8 (47-103)||(5896343-5896399)
[»] chr6 (1 HSPs)
chr6 (47-101)||(10158985-10159039)
[»] chr5 (4 HSPs)
chr5 (33-101)||(13020937-13021005)
chr5 (33-101)||(13092461-13092529)
chr5 (47-93)||(23151273-23151319)
chr5 (47-93)||(28499180-28499226)
[»] scaffold0007 (1 HSPs)
scaffold0007 (47-129)||(188411-188493)
[»] chr7 (6 HSPs)
chr7 (47-93)||(12350767-12350813)
chr7 (47-93)||(41147758-41147804)
chr7 (47-100)||(31802462-31802515)
chr7 (47-101)||(513848-513902)
chr7 (33-101)||(41605364-41605432)
chr7 (33-93)||(43970046-43970106)
[»] scaffold0996 (1 HSPs)
scaffold0996 (47-101)||(1579-1633)
[»] scaffold0067 (1 HSPs)
scaffold0067 (47-93)||(11015-11061)


Alignment Details
Target: scaffold0024 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 69051 - 69305
Alignment:
Q  13 aatatggaggctatagtggaataaagacgctatggcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaa 112  Q
    |||||||||||||| |||||||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  69051 aatatggaggctatggtggaataaagacgctctagcgatactatgagcaactttatttgcttgtctcctaacacacgacacaacaaagccgtttctagaa 69150  T
Q  113 agtaaaagacttctacaatgagaaactagttcaccaaactcgttagaaaaaatagacaaggtgtcgagcgcatcagataaaactttggaatcaatttcga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  69151 agtaaaagacttctacaatgagaaactagttcaccaaactcgttagtaagagtagacaaggtatcgagcgcatcagataaaactttggaatcagtttcga 69250  T
Q  213 acataacatctcccatgccaattgagatggccaccgtaagcctaatgatccagct 267  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  69251 acataacatctcgcatgccatttgagatggccaccgtaagcctaatgatccagct 69305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 4741607 - 4741821
Alignment:
Q  33 ataaagacgctatggcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaaagtaaaagacttctacaatg 132  Q
    ||||||| ||| | ||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  4741607 ataaagatgctctagcaatactatgagcaactttattagcgtgcctcctaacatacgacacaacaaagtagtttctagaaagtaagagacttctacaatg 4741706  T
Q  133 agaaactagttcaccaaactcgttagaaaaaatagacaaggtgtcgagcgcatcagataaaactttggaatcaatttcgaacataacatctcccatgcca 232  Q
    |||||| || |||||||||||||||| || ||||||   ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||    
T  4741707 agaaacaaggtcaccaaactcgttagcaagaatagaggtggtgtggagcgcatcagataaaactttggaatcagtttcgaacataacatctcgcatgtca 4741806  T
Q  233 attgagatggccacc 247  Q
     || |||||||||||    
T  4741807 tttaagatggccacc 4741821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 37670706 - 37670940
Alignment:
Q  13 aatatggaggctatagtggaataaagacgctatggcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaa 112  Q
    ||||||| |||||  |||| ||||||| ||| | |||||||||||| |||||||||||| ||| || |||||||||||||||||||||| ||||||||||    
T  37670706 aatatgggggctagggtgggataaagatgctctagcaatactatgaacaactttatttgtttgccttctaacatacgacacaacaaagtcgtttctagaa 37670805  T
Q  113 agtaaaagacttctacaatgagaaactagttcaccaaactcgttagaaaaaatagacaaggtgtcgagcgcatcagataaaactttggaatcaatttcga 212  Q
    ||||  |||||||||||||||||| | |  |||||  ||||||||| || | ||||   ||||| |||||||||| ||||||||||||||||| ||||||    
T  37670806 agtacgagacttctacaatgagaagcaatgtcaccttactcgttagcaagagtagaggtggtgtggagcgcatcaaataaaactttggaatcagtttcga 37670905  T
Q  213 acataacatctcccatgccaattgagatggccacc 247  Q
    |||||||||||| ||||||| ||| |||| |||||    
T  37670906 acataacatctcacatgccatttgtgatgtccacc 37670940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 10748100 - 10748046
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  10748100 gcaatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagt 10748046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 36756987 - 36757041
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    ||||||||||||||||||||||| ||||| |||| || | ||||||| |||||||    
T  36756987 gcaatactatgagcaactttattagcttgcctccgaataaacgacactacaaagt 36757041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 14786057 - 14786012
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgaca 92  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||    
T  14786057 gcaatactatgagcaacaccatttgcttgcctcctaacatacgaca 14786012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 38599111 - 38598909
Alignment:
Q  13 aatatggaggctatagtggaataaagacgctatggcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaa 112  Q
    ||||||| ||||||||| |  |||||| ||| | |||||||||||||||||||||||  |||| ||||||||||| |||||| ||||||  |||||||||    
T  38599111 aatatgggggctatagttgggtaaagatgctctagcaatactatgagcaactttattatcttgcctcctaacatatgacacatcaaagtcatttctagaa 38599012  T
Q  113 agtaaaagacttctacaatgagaaactagttcaccaaactcgttagaaaaaatagacaaggtgtcgagcgcatcagataaaactttggaatcaatttcga 212  Q
    | ||| |||||||||||||||||||| |  |||||||||||||||| || | |  |    |||| || ||||||||||||||||||| ||||||||||||    
T  38599011 actaagagacttctacaatgagaaacaaagtcaccaaactcgttagcaagagtgaaggttgtgtggaacgcatcagataaaactttgaaatcaatttcga 38598912  T
Q  213 aca 215  Q
    |||    
T  38598911 aca 38598909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 8672726 - 8672616
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaaagtaaaagacttctacaatgagaaactagttcac 146  Q
    |||||||||||||||| |||||||| |   || |||||| |||||||   ||| ||||||||| ||||||| | ||||||||||||| |||| || ||||    
T  8672726 gcaatactatgagcaattttatttgttgcccttctaacacacgacaccttaaaattgtttctaaaaagtaagaaacttctacaatgaaaaacaaggtcac 8672627  T
Q  147 caaactcgtta 157  Q
    |||||||||||    
T  8672626 caaactcgtta 8672616  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 39501175 - 39501121
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||    
T  39501175 gcaatactataagcaactctatttgcttgcctcctaacatacgacactacaaagt 39501121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 33708723 - 33708564
Alignment:
Q  87 acgacacaacaaagttgtttctagaaagtaaaagacttctacaatgagaaactagttcaccaaactcgttagaaaaaatagacaaggtgtcgagcgcatc 186  Q
    ||||||||||||||| ||| ||||||| ||| ||||||||||| ||||| |  || ||| ||||||| |||| |||||||||   |||||| ||| | |     
T  33708723 acgacacaacaaagtcgttcctagaaaataatagacttctacattgagatataaggtcatcaaactcattag-aaaaatagaggcggtgtctagcacgtt 33708625  T
Q  187 agataaaactttggaatcaatttcgaacataacatctcccatgccaattgagatggccacc 247  Q
    |||||||||||| |||| | ||| ||||||||||||||  |||||  |||||||| |||||    
T  33708624 agataaaactttagaattagtttggaacataacatctcatatgccgtttgagatgtccacc 33708564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 44550236 - 44550349
Alignment:
Q  48 caatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaaagtaaaagacttctacaatgagaaactagttcacc 147  Q
    ||||||||||||||||  ||||||||||||| ||||| ||| |||| | ||| |  |||||||||||||| ||||||||| | ||| | || ||||||||    
T  44550236 caatactatgagcaaccatatttgcttgtcttctaacctacaacactataaaatcatttctagaaagtaagagacttctaaattgaaatacaagttcacc 44550335  T
Q  148 aaactcgttagaaa 161  Q
    ||||| ||| ||||    
T  44550336 aaacttgtttgaaa 44550349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 11583367 - 11583469
Alignment:
Q  50 atactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaaagtaaaagacttctacaatgagaaactagttcaccaa 149  Q
    |||||||||  ||||||||| | |||||| |||||||||||||||| ||| | |||| |||||| ||| ||||||||||||| | |||| || ||| |||    
T  11583367 atactatgaataactttattagtttgtcttctaacatacgacacaataaaatcgtttttagaaattaagagacttctacaatcaaaaacaaggtcatcaa 11583466  T
Q  150 act 152  Q
    |||    
T  11583467 act 11583469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 42327933 - 42327987
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  42327933 gcaatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagt 42327987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 1481080 - 1480972
Alignment:
Q  48 caatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaaagtaaaagacttctacaatgagaaactagttcacc 147  Q
    |||||||||||| |||| |||||||||| |||||| |||||||||| |||||||||  ||||  |||||  | ||||||||| ||||  || || |||||    
T  1481080 caatactatgagtaactctatttgcttgcctcctatcatacgacactacaaagttgggtctattaagtagtaaacttctacattgagttacaagatcacc 1480981  T
Q  148 aaactcgtt 156  Q
     ||||||||    
T  1480980 gaactcgtt 1480972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 32499596 - 32499550
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacac 93  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||    
T  32499596 gcaatactatgagcaacactatttgcttgcctcctaacatacgacac 32499550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 11629550 - 11629496
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  11629550 gcaatactatgagcaactctatttgcttgcctcctaacatacgacactacaaagt 11629496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 9180761 - 9180815
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  9180761 gcaatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagt 9180815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 34752720 - 34752774
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||| |||||||    
T  34752720 gcaatactatgagcaattctatttgcttgcctcctaacatacgacactacaaagt 34752774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 5792196 - 5792125
Alignment:
Q  58 agcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaaagtaaaagacttctaca 129  Q
    |||||| ||||||||||| |||| |||||||||||| |||||||||||||||   | ||| |||||||||||    
T  5792196 agcaaccttatttgcttggctccgaacatacgacactacaaagttgtttctatttaataagagacttctaca 5792125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 5896343 - 5896399
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttg 103  Q
    |||||||||||||| ||| ||||| |||| ||||||||| ||||||| ||| |||||    
T  5896343 gcaatactatgagctactatattttcttgcctcctaacaaacgacactacatagttg 5896399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 10158985 - 10159039
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  10158985 gcaatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagt 10159039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 13020937 - 13021005
Alignment:
Q  33 ataaagacgctatggcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||| |||||| | |||||||||| |||||| ||||||||||| |||| |||||||||||| |||||||    
T  13020937 ataaggacgctctagcaatactataagcaaccttatttgcttgcctccgaacatacgacactacaaagt 13021005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 13092461 - 13092529
Alignment:
Q  33 ataaagacgctatggcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||| |||||| | |||||||||| |||||| ||||||||||| |||| |||||||||||| |||||||    
T  13092461 ataacgacgctctagcaatactataagcaaccttatttgcttgcctccgaacatacgacactacaaagt 13092529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 23151319 - 23151273
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacac 93  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||    
T  23151319 gcaatactatgagcaacactatttgcttgcctcctaacatacgacac 23151273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 28499226 - 28499180
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacac 93  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||    
T  28499226 gcaatactatgagcaacactatttgcttgcctcctaacatacgacac 28499180  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 188411 - 188493
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagttgtttctagaaagtaaaagacttctaca 129  Q
    |||||| ||||||||||| ||||| |||||||||||| |||||| || ||||||| |  ||||  |||||| |||||||||||    
T  188411 gcaatattatgagcaactctatttacttgtctcctaatatacgatactacaaagtcgggtctaataagtaagagacttctaca 188493  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 12350767 - 12350813
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacac 93  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||    
T  12350767 gcaatactatgagcaacaatatttgcttgcctcctaacatacgacac 12350813  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 41147804 - 41147758
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacac 93  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||    
T  41147804 gcaatactatgagcaacactatttgcttgcctcctaacatacgacac 41147758  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 31802515 - 31802462
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaag 100  Q
    ||||||||||||||||| ||||| ||||| |||| |||||||||||| ||||||    
T  31802515 gcaatactatgagcaaccttattagcttgcctccgaacatacgacactacaaag 31802462  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 513902 - 513848
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||||||||||||||||  |||| ||||| |||| |||||||||||| |||||||    
T  513902 gcaatactatgagcaaccctattagcttgcctccaaacatacgacactacaaagt 513848  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 41605432 - 41605364
Alignment:
Q  33 ataaagacgctatggcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||| |||||| | ||||||||||||||||| |||||||| |  |||  |||||||||||| |||||||    
T  41605432 ataaggacgctctagcaatactatgagcaaccttatttgcctacctctaaacatacgacactacaaagt 41605364  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 43970106 - 43970046
Alignment:
Q  33 ataaagacgctatggcaatactatgagcaactttatttgcttgtctcctaacatacgacac 93  Q
    |||| |||||| | ||||||||||||||||| ||||||||||| || | |||||| |||||    
T  43970106 ataaggacgctctagcaatactatgagcaaccttatttgcttgcctacgaacatatgacac 43970046  T

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Target: scaffold0996 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 1579 - 1633
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacacaacaaagt 101  Q
    |||||||||||||||||  |||| ||||| |||| |||||||||||| |||||||    
T  1579 gcaatactatgagcaaccctattagcttgcctccgaacatacgacactacaaagt 1633  T

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Target: scaffold0067 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 11015 - 11061
Alignment:
Q  47 gcaatactatgagcaactttatttgcttgtctcctaacatacgacac 93  Q
    ||||||||| |||||||  |||||||||| |||||||||||||||||    
T  11015 gcaatactacgagcaacactatttgcttgcctcctaacatacgacac 11061  T

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