View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_low_23 (Length: 249)
Name: NF18504_low_23
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 53120061 - 53119837
Alignment:
| Q |
3 |
gatgtggttgaattttgattattccattctactgtggaactaggtgacactgttggcgtcattggattcgaaacgcatggtactgagaaaatgttagcgt |
102 |
Q |
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| T |
53120061 |
gatgtggttgaattttgattattccattctactgtggaactaggtgacactgttggcgtcattggattcgaaacgcatggtactgagaaaatgttagcgt |
53119962 |
T |
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| Q |
103 |
gcagtagcatgctgtattccttcannnnnnnnggtagtttggggtggggatcattagaaatggattgatatagaccaatgctaggcattttctatcacta |
202 |
Q |
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| T |
53119961 |
gcagtagcatgctgtattccttca-tttttttggtagtttggggtggggatcattagaaatggattgatatagaccaatgctaggcatttcctatcacta |
53119863 |
T |
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| Q |
203 |
ttttgttgtatggttggcattgattt |
228 |
Q |
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| T |
53119862 |
ttttgttgtatggttggcattgattt |
53119837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 53110487 - 53110419
Alignment:
| Q |
160 |
aaatggattgatatagaccaatgctaggcattttctatcactattttgttgtatggttggcattgattt |
228 |
Q |
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| T |
53110487 |
aaatggattgatatagaccaatactaggcattttctctcactattatgtagtatgattggcattcattt |
53110419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 53115908 - 53115836
Alignment:
| Q |
156 |
ttagaaatggattgatatagaccaatgctaggcattttctatcactattttgttgtatggttggcattgattt |
228 |
Q |
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| T |
53115908 |
ttagaaatggattgatatagacaattattaggaattttctatcactattttgttgtatgattggcattcattt |
53115836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 53116616 - 53116549
Alignment:
| Q |
3 |
gatgtggttgaattttgattattccattctactgtggaactaggtgacactgttggcgtcattggatt |
70 |
Q |
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|||| |||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
53116616 |
gatgaggttgaattttgcaaattccattctactgtggaacgaggtgacactgttggtgtcattggatt |
53116549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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