View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18504_low_3 (Length: 654)

Name: NF18504_low_3
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18504_low_3
NF18504_low_3
[»] chr7 (1 HSPs)
chr7 (19-644)||(136666-137290)


Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 19 - 644
Target Start/End: Complemental strand, 137290 - 136666
Alignment:
Q  19 ttcatcccgttcctccaatttatgtaataaatttctcccgtctgagtaaccaattaattgttcacactcaattactaattatcagattcaaagttcaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  137290 ttcatcccgttcctccaatttatgtaataaatttctcccgtctgagtaaccaattaattgttcacactcaattactaattatcagattcaaagttcaaac 137191  T
Q  119 taaaatatggtgaaacaaataaaactaaaacaaggccagaacacaacacacactttatatattttatattgacattcacggatcagtttaatttgcaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  137190 taaaatatggtgaaacaaataaaactaaaacaaggccagaacacaacacacactttatatattttatattgacattcacggatcagtttaatttgcaaat 137091  T
Q  219 tcaacaacagaaaccaagaaaagttgcattgcaccttaccctataaaggaaaagttaaatgaaaagaagtgagaatatttgagaatgtaaaaagcaaaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  137090 tcaacaacagaaaccaagaaaagttgcattgcaccttaccctataaaggaaaagttaaatgaaaagaagtgagaatatttgagaatgtaaaaagcaaaac 136991  T
Q  319 accactatactactactactttatttttctagggnnnnnnnngtcagttactgtagctagcgtgcctggaatgctgttcttattattggaattagaaagc 418  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  136990 accactatactactactactttatttttctagggttttttttgtcagttactgtagctagcgtgcctggaatgctgttcttattattggaattagaaaac 136891  T
Q  419 atattaattaaattaaaaagaccaaagagatagaacaaaaaagatccagcatcatgcaactagcaaaggtgagtaaattttgaaagaagaagagataaga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  136890 atattaattaaattaaaaagaccaaagagatagaacaaaaaagatccagcatcatgcaactagcaaa-gtgagtaaattttgaaagaagaagagataaga 136792  T
Q  519 ataagagaatagtggaagaacctttaggtcaaggcattgttcccaatgataaggaagagagatattggagttgagctctaaagtggcatctgaattgttg 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  136791 ataagagaatagtggaagaacctttaggtcaaggcattgttcccaatgataaggaagagagatattggagttgagctctaaagtggcatctgaattgttg 136692  T
Q  619 gagatatgattttcatctgtgctgct 644  Q
    ||||||||||||||||||| ||||||    
T  136691 gagatatgattttcatctgagctgct 136666  T

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