View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_low_4 (Length: 598)
Name: NF18504_low_4
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 4 - 582
Target Start/End: Original strand, 42944126 - 42944701
Alignment:
| Q |
4 |
tttgtaaatactatacaagatttttacatttggaaatttggataaatgctttagtctttgattctgcaatgatgtatgtaaatcagaaagcacctgtagc |
103 |
Q |
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| T |
42944126 |
tttgtaaatactatacaagattt--acatttggaaatttggataaatgctttagtctttgattctgcaatgatgtatgtaaatcagaaagcacctgtagt |
42944223 |
T |
|
| Q |
104 |
aagccttgcttgattgacaagagacaatagtactgtgaaagaataaagggttccaaagttttagctgtattgatggtgtcaccacgacaaaatagtcctc |
203 |
Q |
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| T |
42944224 |
aagccttgcttgattgacaagagacaatagtactgtgaaagaataaagggttc-aaagttttagctgtattgatggtgtcaccacgacaaaatagtcctc |
42944322 |
T |
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| Q |
204 |
aatttgattcctgaaattgannnnnnnnagaccgaggacaaactttaaactttttgaagcatacaattaacaacttatttttgttctaaaacataattga |
303 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42944323 |
aatttgattcctgaaattgattttttttcgaccgaggacaaactttaaactttttgaagcatacaattaacaacttaattttgttctaaaacataattga |
42944422 |
T |
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| Q |
304 |
gttaatttcagatgataaagaatggccttaagaaatagagatttaatgtaacaaagaaaagtaagaaaaaatgaagcaagtttttctcttctatttctga |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944423 |
gttaatttcagatgataaagaatggccttaagaaatagagatgtaatgtaacaaagaaaagtaagaaaaaatgaagcaagtttttctcttctatttctga |
42944522 |
T |
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| Q |
404 |
acacaaaatgtcaccaaagtattgaactagttgtgcataatttccttacaatctatttacagtcaacaagcattcagacttcatgctataccatatgtca |
503 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
42944523 |
acacaaaatgtcaccaaagtatcgaactagttgtgcataatttccttacaatctatttacagacaacaaacattcagacttcatgctataccatatgtca |
42944622 |
T |
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| Q |
504 |
gaaaaacttgcacacatgttgaaggtccctgaaatcatcttccaacagtttttcctactgctataatatctttgattct |
582 |
Q |
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| T |
42944623 |
gaaaaacttgcacacatgttgaaggtccctgaaatcatcttccaacagtttttcctactgctataatatctttgattct |
42944701 |
T |
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