View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_low_5 (Length: 570)
Name: NF18504_low_5
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 11 - 552
Target Start/End: Original strand, 10567571 - 10568112
Alignment:
| Q |
11 |
atcatcacgaacatccaagaaaaacttatgaactctagtttgataagattgtgaatcacttaaacttaacgtatcagtttccccttgaaaccaaagaagt |
110 |
Q |
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| T |
10567571 |
atcatcacgaacatccaagaaaaacttatgaactctagtttgataagattgtgcatcacttaaactcaccgtatcagtttccccttgaaaccaaagaagt |
10567670 |
T |
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| Q |
111 |
gcttgaatatttccaccatcatcaagcaacgatgctttaaccctcttcatcatgttgttataaagcatttttcccctttcccattcactaatattggtac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10567671 |
gcttgaatatttccaccatcatcaagcaacgatgctttaaccctcttcatcatgttcttataaagcacttttcccctttcccattcactaatattggtac |
10567770 |
T |
|
| Q |
211 |
cacccattgcacatggaaccaaccctaccaaaccaagtcccaagtatttttccaacacatgatttgcaaacaccattcctggtccaatcccatttgtttt |
310 |
Q |
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| T |
10567771 |
cacccgttgcacatggaaccaaccctaccaaaccaaatcccaagtttttttccaacacatgatttgcaaacaccattcctggtccaatcccatttgtttt |
10567870 |
T |
|
| Q |
311 |
tcgagtatctatgtcttcatgaagtggttcttgtgcttcaacccactcaagatgtgcattgagcttcaaaattgatggatttggttgactttgaggtgga |
410 |
Q |
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| T |
10567871 |
tagagtatctatgtcttcatgaagtggttcttgtgcttcaacccactcaagatgtgcattgagctttaaaattgatggatttggttgactttgaggtgga |
10567970 |
T |
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| Q |
411 |
acaacaccgtcccaggttgcgacaccggttgtcgtgtcgtttactactcctcctcttcctcccatgttgctttgtcctgctaaaataaatatgnnnnnnn |
510 |
Q |
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| T |
10567971 |
acaacactgtcccaggttgcgacaccggttgtcgtgtcatttactactcctcctcttcctcccatgttgctttgtcctgctaatataaatatgttttttt |
10568070 |
T |
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| Q |
511 |
gagcttctaccttcattgcccatgcttgaataatcacaaaaa |
552 |
Q |
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| T |
10568071 |
gggcttctaccttcattgcccatgcttgaataatcacaaaaa |
10568112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 554
Target Start/End: Original strand, 47182679 - 47183219
Alignment:
| Q |
11 |
atcatcacgaacatccaagaaaaacttatgaactctagtttgataagattgtgaatcacttaaacttaacgtatcagtttccccttgaaaccaaagaagt |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||| || ||||||| |||| ||| ||||| ||||||||| ||||||||||||||||||||| |
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| T |
47182679 |
atcatcacgaacatccaagaaaaacttgtgaactctagcttggtatgattgtgcatcagttagacttaccgtatcagtctccccttgaaaccaaagaagt |
47182778 |
T |
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| Q |
111 |
gcttgaatatttccaccatcatcaagcaacgatgctttaaccctcttcatcatgttgttataaagcatttttcccctttcccattcactaatattggtac |
210 |
Q |
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||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||| | |
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| T |
47182779 |
gctctaatatt---accatcatcacgcaacgatgctttaaccctcttcatcatgtggttataaagcactttacccctttcccattcacttatattggtgc |
47182875 |
T |
|
| Q |
211 |
cacccattgcacatggaaccaaccctaccaaaccaagtcccaagtatttttccaacacatgatttgcaaacaccattcctggtccaatcccatttgtttt |
310 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||||| ||| |||||||| |||||| || ||||| |||| |||||||||| ||||||||| || |
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| T |
47182876 |
caccaattgcacatgggaccaaccccaccaaaccaagtcccgagtttttttccagcacatgtttcgcaaatgccatacctggtccaaccccatttgtctt |
47182975 |
T |
|
| Q |
311 |
tcgagtatctatgtcttcatgaagtggttcttgtgcttcaacccactcaagatgtgcattgagcttcaaaattgatggatttggttgactttgaggtgga |
410 |
Q |
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| | |||||||||||||||||||| ||||| |||||||||||||| | ||||| |||||||||||||| |||||||||||||||||||| |||| ||||| |
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| T |
47182976 |
tagcgtatctatgtcttcatgaagaggttcatgtgcttcaacccatttaagatttgcattgagcttcataattgatggatttggttgacattgaagtgga |
47183075 |
T |
|
| Q |
411 |
acaacaccgtcccaggttgcgacaccggttgtcgtgtcgtttactactcctcctcttcctcccatgttgctttgtcctgctaaaataaatatgnnnnnnn |
510 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
47183076 |
acaacaccgtcccaggttgtgacaccggttgtcgtgtcgtttactactcctcctcttccagccatgttgctttgtcctgctaatataaatatgttttttt |
47183175 |
T |
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| Q |
511 |
gagcttctaccttcattgcccatgcttgaataatcacaaaaact |
554 |
Q |
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| ||||||| |||||||| ||||| |||||| |||| ||||||| |
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| T |
47183176 |
gggcttctagcttcattggccatgtttgaatgatcagaaaaact |
47183219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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