View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18504_low_7 (Length: 525)
Name: NF18504_low_7
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 12 - 508
Target Start/End: Original strand, 699858 - 700354
Alignment:
| Q |
12 |
atgaacccttattttgattcttttgttaggtggcaaatgaggaaattgaagtcattggggaaggttgttaaagatgttaggtatacaattttttcgcctt |
111 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
699858 |
atgaacccttattttgattctttcgttaggtggcaaatgaggaaattgaagtcattggggaaggttgttaaagatgttaggtatacaattttttcgcctt |
699957 |
T |
|
| Q |
112 |
tggatggacaaccgtgtgctgatcatgatagggctagtggtgaaggtgttcagcctcaagagtatacgattatcaagatggagttggtatcgccttttcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
699958 |
tggatggacaaccgtgtgctgatcatgatagggctagtggtgaaggtgttcagcctcaagagtatatgattatcaagatggagttggtatcgccttttcc |
700057 |
T |
|
| Q |
212 |
tgataaatttaaggctcttgaaggaaagaaggtttttcttgctgctgcgatgttgagacccgagactatgtatggtcaaacaaatgcatggattttgcct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
700058 |
tgataaatttaaggctcttgaaggaaagaaggtttttcttgctgctgcgacgttgagacccgagactatgtatggtcaaacaaatgcatgggttttgcct |
700157 |
T |
|
| Q |
312 |
gatggaaaatatggagcatttgaaatcactgaaactgaggtctttgttcttacacatagagcagcacttaaccttgcttaccagaaccactcaagagtac |
411 |
Q |
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| T |
700158 |
gatggaaaatatggagcatttgaaatcactgaaactgaggtctttgttcttacacatagagcagcacttaaccttgcttaccagaaccactcaagagtac |
700257 |
T |
|
| Q |
412 |
ctcaggaacccacttgcttgcttgagctcacaggtcatgatttgatcggccttccacttaggtctccgcttgcgttaactgaggttatatatgtact |
508 |
Q |
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| T |
700258 |
ctcaggaacccacttgcttgcttgagctcacaggtcatgatttgatcggccttctacttaggtctccgcttgcgttaactgaggttatatttgtact |
700354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 466
Target Start/End: Complemental strand, 23262265 - 23261811
Alignment:
| Q |
12 |
atgaacccttattttgattcttttgttaggtggcaaatgaggaaattgaagtcattggggaaggttgttaaagatgttaggtatacaattttttcgcctt |
111 |
Q |
| |
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||||| |||||||||||| |||||||||||||||| |||||||| |||||| | | || ||||||||||| ||||||||||||||| |||||||||| | |
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| T |
23262265 |
atgaatccttattttgatgcttttgttaggtggcatatgaggaagttgaaggcgtctggtaaggttgttaaggatgttaggtatacagttttttcgccat |
23262166 |
T |
|
| Q |
112 |
tggatggacaaccgtgtgctgatcatgatagggctagtggtgaaggtgttcagcctcaagagtatacgattatcaagatggagttggtatcgccttttcc |
211 |
Q |
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|||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| || |||||||| |
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| T |
23262165 |
tggatggacagccttgtgcggatcatgatagggctagtggtgaaggtgttcagccgcaagagtatacgattattaagatggaggtggtttctccttttcc |
23262066 |
T |
|
| Q |
212 |
tgataaatttaaggctcttgaaggaaagaaggtttttcttgctgctgcgatgttgagacccgagactatgtatggtcaaacaaatgcatggattttgcct |
311 |
Q |
| |
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||| || ||||||| | | || ||||||||||||||||||||||| |||| |||||| || |||||||||||||||||||||||||| ||| | |||||| |
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| T |
23262065 |
tgagaagtttaaggttttggagggaaagaaggtttttcttgctgcggcgacgttgaggcctgagactatgtatggtcaaacaaatgcttgggtgttgcct |
23261966 |
T |
|
| Q |
312 |
gatggaaaatatggagcatttgaaatcactgaaactgaggtctttgttcttacacatagagcagcacttaaccttgcttaccagaaccactcaagagtac |
411 |
Q |
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||||| |||||||| || ||||| || | |||||| ||||| |||||| | | ||||| ||||| ||||| ||||||||||| || ||||| || |||| |
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| T |
23261965 |
gatgggaaatatggggcttttgagattaatgaaacggaggtgtttgttgtagcgcatagggcagcgcttaatcttgcttaccaaaatcactctagggtac |
23261866 |
T |
|
| Q |
412 |
ctcaggaacccacttgcttgcttgagctcacaggtcatgatttgatcggccttcc |
466 |
Q |
| |
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||||| |||| ||||| ||||||||||| || ||||| ||||||||||| ||||| |
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|
| T |
23261865 |
ctcagaaaccgacttgtttgcttgagcttacgggtcaggatttgatcgggcttcc |
23261811 |
T |
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