View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18504_low_9 (Length: 472)
Name: NF18504_low_9
Description: NF18504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18504_low_9 |
 | |
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| [»] scaffold0036 (2 HSPs) |
| | |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 34158421 - 34158110
Alignment:
| Q |
21 |
tactagctgtaggatacatatagcatatatgagcttaagtcctaattccattactta----tgttttaagaattatatgatgctagtttcatctctacta |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34158421 |
tactagcagtaggatacatatagcatatatgagcttaagtcctaattccattacttacttatgttttaagaattatatgatgctagtttcatctctacta |
34158322 |
T |
|
| Q |
117 |
ctgtgtgcatcggattgttgaactttatggtgtgtgggattaaagttatgattttaatatgattgtatactatgattgccttaattagtggcggataaaa |
216 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34158321 |
ctgtgttcatcagattgttgaactttatggtgtgtgggattaaagttatgattttaatatgattgtatactatgattgccttaattagtggcggataaaa |
34158222 |
T |
|
| Q |
217 |
agagaatgtgtgctttagtggcggagtaaataaactaagtttgccttagtggcggttaaaaagagattgtgtgccttagtgacggattaaataaattatg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| | ||||||||||| |||| |
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| T |
34158221 |
agagaatgtgtgctttagtggcggagtaaataaactatgtttgccttagtgacggttaaaaagagattgtgtgctttagtggccgattaaataaactatg |
34158122 |
T |
|
| Q |
317 |
tttgccttagtg |
328 |
Q |
| |
|
|||||||||||| |
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|
| T |
34158121 |
tttgccttagtg |
34158110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 309 - 424
Target Start/End: Complemental strand, 34158040 - 34157925
Alignment:
| Q |
309 |
aaattatgtttgccttagtggcgggttaaataatatgtttgccttagtgacggtttatatatggttcatgtgatttcaggagcatgcataatattgcata |
408 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34158040 |
aaattgtgtgtgccttagtggcgggttaaataatatgtttgccttagtggcggtttatatccggttcatgtgatttcaggagcatgcataatattgcata |
34157941 |
T |
|
| Q |
409 |
tgaactaaattaactt |
424 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
34157940 |
tgaactaaattaactt |
34157925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 201 - 357
Target Start/End: Complemental strand, 34158176 - 34158021
Alignment:
| Q |
201 |
ttagtggcggataaaaagagaatgtgtgctttagtggcggagtaaataaactaagtttgccttagtggcggttaaaaagagattgtgtgccttagtgacg |
300 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| || |
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|
| T |
34158176 |
ttagtgacggttaaaaagagattgtgtgctttagtggccgattaaataaactatgtttgccttagtgacggttaaaaagagattgtgtgctttagtggcg |
34158077 |
T |
|
| Q |
301 |
gattaaataaattatgtttgccttagtggcgggttaaataatatgtttgccttagtg |
357 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| | | ||| |||||||||| |
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|
| T |
34158076 |
gattaaataaactatgtttgccttagtggc-ggttaaaaattgtgtgtgccttagtg |
34158021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 201 - 332
Target Start/End: Complemental strand, 34158115 - 34157988
Alignment:
| Q |
201 |
ttagtggcggataaaaagagaatgtgtgctttagtggcggagtaaataaactaagtttgccttagtggcggttaaaaagagattgtgtgccttagtgacg |
300 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||| || |
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|
| T |
34158115 |
ttagtgacggttaaaaagagattgtgtgctttagtggcggattaaataaactatgtttgccttagtggcggttaaaaattg--tgtgtgccttagtggcg |
34158018 |
T |
|
| Q |
301 |
gattaaataaattatgtttgccttagtggcgg |
332 |
Q |
| |
|
| |||||||| |||||||||||||||||||| |
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|
| T |
34158017 |
ggttaaataa--tatgtttgccttagtggcgg |
34157988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 442
Target Start/End: Complemental strand, 39044592 - 39044510
Alignment:
| Q |
360 |
ggtttatatatggttcatgtgatttcaggagcatgcataatattgcatatgaactaaattaactttagtgaaagaatgatgat |
442 |
Q |
| |
|
||||||||||| |||||| | ||| |||||||||||||| |||||||| |||||||| ||| ||| ||||||||||||||| |
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|
| T |
39044592 |
ggtttatatatagttcatttagttttaggagcatgcataacattgcataagaactaaaataaaattaatgaaagaatgatgat |
39044510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 31980105 - 31980436
Alignment:
| Q |
21 |
tactagctgtaggatacatatagcatatatgagcttaagtcctaattccattacttatgttttaagaattatatgatgctagtttcatctctactactgt |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31980105 |
tactagctgtaggatacacatagcatatatgagcttaagtcctaattccattacttatgttttaagaattatatgatgctagtttcatctctactactgt |
31980204 |
T |
|
| Q |
121 |
gtgcatcggattgttgaactttatggtgtgtgggattaaagttatgattttaatatgattgtatactatgattgccttaattagtggcggataaaaagag |
220 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | |||||||||||||||||||| |
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|
| T |
31980205 |
gtgcatcagattgttgaactttatggtgtgtgggattaaagttatgattttaatatgattatatactatggttg----acttagtggcggataaaaagag |
31980300 |
T |
|
| Q |
221 |
aatgtgtgctttagtggcggagtaaataaactaagtttgccttagtggcgg-ttaaaaagagattgtgtgccttagtgacggattaaataaattatgttt |
319 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| | | ||| ||| |||||| ||| |||| ||||| || | |
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| T |
31980301 |
aatgtgtgccttagtggcggagtaaataaactatgtttgccttagtggcggattaaataaattatgtttgctttagtggcgg-ttaa--aaattgcgtgt |
31980397 |
T |
|
| Q |
320 |
gccttagtggcgggttaaataa-tatgtttgccttagtg |
357 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
31980398 |
gccttagtggcgggttaaataattatgtgtgccttagtg |
31980436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 31980280 - 31980384
Alignment:
| Q |
261 |
cttagtggcggttaaaaagagattgtgtgccttagtgacggattaaataaattatgtttgccttagtggcgggttaaataa--tatgtttgccttagtga |
358 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||| |||||||| ||||||||| |||||| |
|
|
| T |
31980280 |
cttagtggcggataaaaagagaatgtgtgccttagtggcggagtaaataaactatgtttgccttagtggcggattaaataaattatgtttgctttagtgg |
31980379 |
T |
|
| Q |
359 |
cggtt |
363 |
Q |
| |
|
||||| |
|
|
| T |
31980380 |
cggtt |
31980384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 31980333 - 31980450
Alignment:
| Q |
222 |
atgtgtgctttagtggcggagtaaataaactaagtttgccttagtggcggttaaaaagagattgtgtgccttagtgacggattaaataaattatgtttgc |
321 |
Q |
| |
|
|||| ||| ||||||||||| |||||||| || |||||| ||||||||||||||||| | ||||||||||||| ||| |||||||| |||||| ||| |
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|
| T |
31980333 |
atgtttgccttagtggcggattaaataaattatgtttgctttagtggcggttaaaaattgc--gtgtgccttagtggcgggttaaataa-ttatgtgtgc |
31980429 |
T |
|
| Q |
322 |
cttagtggcgggttaaataat |
342 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31980430 |
cttagtggcgggttaaataat |
31980450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 109788 - 109877
Alignment:
| Q |
231 |
ttagtggcggagtaaataaactaagtttgccttagtggcggttaaaaagagattgtgtgccttagtgacggattaaataaattatgtttgc |
321 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
109788 |
ttagtggcggattaaataaactatattcgccttagtggcggttaaataattat-gtgtgccttagtggcggattaaataaattatgtttgc |
109877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 109787 - 109853
Alignment:
| Q |
291 |
cttagtgacggattaaataaattatgtttgccttagtggcgggttaaataa-tatgtttgccttagtg |
357 |
Q |
| |
|
||||||| ||||||||||||| ||| || ||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
109787 |
cttagtggcggattaaataaactatattcgccttagtggc-ggttaaataattatgtgtgccttagtg |
109853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 14491087 - 14491123
Alignment:
| Q |
285 |
gtgtgccttagtgacggattaaataaattatgtttgc |
321 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14491087 |
gtgtgccttagtggcggattaaataaattatgtttgc |
14491123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 31802 - 31851
Alignment:
| Q |
315 |
tgtttgccttagtggcgggttaaataa-tatgtttgccttagtgacggtt |
363 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
31802 |
tgtttgccttagtggcgggttaaataattatgtttgtctatgtgacggtt |
31851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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