View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18505_high_10 (Length: 316)
Name: NF18505_high_10
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 24709920 - 24709629
Alignment:
| Q |
18 |
ataccaacagcagtagtcccaatttgcatttccctttcaaattcgaatcagattctttgacataaattgatttcgataaccataaattagttcagaaact |
117 |
Q |
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| T |
24709920 |
ataccaacagcagtagtcccaatttgcatttccctttcaaattcgaatcagattctttgacataaattgatttcgataaccataaattaattcagaaact |
24709821 |
T |
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| Q |
118 |
actgaaatcaagaatgattgaaaatcttttaaaacagaaaatagtgaaataaagctctggcgccacttaagcattgtgcgcaaatactcgacgatacaac |
217 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24709820 |
actgaaatcaagagtgattgaaaatctttaaaaacagaaaatagtgaaataaagctcaggcgccacttaagcattgtgcgcaaatactcgacgatacaac |
24709721 |
T |
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| Q |
218 |
aagtccttcaaagtgttggaggtgacataatcgtcaaaataaaatagaaaaagataaaggataagagttttttagttttacacgttcatctc |
309 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24709720 |
aagtccttcaaagtgttggaggtgacacaatcgtcaaaataaaatagaaaaagataaaggataagagttttttagttttacacgttcttctc |
24709629 |
T |
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