View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18505_high_11 (Length: 284)
Name: NF18505_high_11
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 23805832 - 23805669
Alignment:
| Q |
117 |
tgacatatattataaccaaactgctctcaacccacctagcataagatgtgcaagagaagagagcaaaagatacaaagccatccaacaaagttagaaaaga |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23805832 |
tgacatatattataactaaactgctctcaacccacctagcacaaggtgtgcaagagaagagagcaaaagatacaaagccatccaacaaagttagaaaaga |
23805733 |
T |
|
| Q |
217 |
aaaaatatcagaacccatcctatgctcatacacaacacatgagagggctaatccatcacctatg |
280 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
23805732 |
aaaaatatcagaacccagcctatgctcatacacaacacaagagagggctaatccaccacctatg |
23805669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 23806278 - 23806160
Alignment:
| Q |
1 |
ctcactttcccttggattgttagaaattatacttaattgctttatgatgatgcttgatgctttatagtgaatgaatttcatcctttaaaaagctgatcct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23806278 |
ctcactttcccttggattgtttgaaattatacttaattgctttatgatgatgcttgatgctttatagtgaatgaatttcatcctttaaaaagttgatcct |
23806179 |
T |
|
| Q |
101 |
tactttttgactcaattga |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23806178 |
tactttttgactcaattga |
23806160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 28838874 - 28838932
Alignment:
| Q |
163 |
tgtgcaagagaagagagcaaaagatacaaagccatccaacaaagttagaaaagaaaaaa |
221 |
Q |
| |
|
||||| |||||||| ||||||| ||||| || |||||||||||| ||||||| |||||| |
|
|
| T |
28838874 |
tgtgctagagaagatagcaaaatatacagagtcatccaacaaagctagaaaataaaaaa |
28838932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 10721893 - 10721833
Alignment:
| Q |
169 |
agagaagagagcaaaagatacaaagccatccaacaaagttagaaaagaaaaaatatcagaa |
229 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10721893 |
agagaagagaacaaaagatacaaagtcatccaacaaagttagaatagaaaaaataacagaa |
10721833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 43119067 - 43119163
Alignment:
| Q |
121 |
atatattataaccaaactgctctcaacccacctagcataagatgtgcaagagaagagagcaaaagatacaaagccatccaacaaagttagaaaagaaaaa |
220 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | | ||| ||||| ||| |||||||||||||||| |||| ||| |||||||| ||||| ||||||| |
|
|
| T |
43119067 |
atatattataaccaaactactctcaacccaac----acaaggtgtgccagaaaagagagcaaaagatataaagtcattcaacaaagctagaagagaaaaa |
43119162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 18418058 - 18418000
Alignment:
| Q |
171 |
agaagagagcaaaagatacaaagccatccaacaaagttagaaaagaaaaaatatcagaa |
229 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
18418058 |
agaagagagcaaaagatatagagtcatccaacaaagctagaagagaaaaaataacagaa |
18418000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University