View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18505_high_5 (Length: 446)
Name: NF18505_high_5
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 32062316 - 32062634
Alignment:
| Q |
18 |
gtatgtgatgttacaaccatgcacatagaaagatagagataaaagatcttgtttacgttaattgatgattggtatttgacactaacattgagnnnnnnng |
117 |
Q |
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| T |
32062316 |
gtatgtgatgttacaaccatgcacatagaaagatagagataaaagatcttgtttacgttaattgatgattggtatttgacactaacattgagaaaaaaag |
32062415 |
T |
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| Q |
118 |
aggagaaaaagtgaatatgatgaatatgaatggaacatggtaaccgtaattactgagagaaagggtttatagagagagaaagagatagtgcatgcaaaat |
217 |
Q |
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| T |
32062416 |
aggagaaaaagtgaatatgatgaatatgaatggaacatggtaaccgtaattactgagagaaagggtttatagagagagaaagagatagtgcatgcaaaat |
32062515 |
T |
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| Q |
218 |
gcatatataacatacaaacacaatacacgcacgcatagagataaagattgtgcaaaatgcatgcatactcattattattgtttcattcataatccataat |
317 |
Q |
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| T |
32062516 |
gcatatataacatacaaacacaatacacgcacgcatagagataaagattgtgcaaaatgcatgcatactcattattattgtttcattcataatccataat |
32062615 |
T |
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| Q |
318 |
aataacaccgtttacctta |
336 |
Q |
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| T |
32062616 |
aataacaccgtttacctta |
32062634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 32062673 - 32062736
Alignment:
| Q |
375 |
aacataaaaaccttacctgtttctactgcttttctaggttga--ctcgcttgtttttgcctttg |
436 |
Q |
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| T |
32062673 |
aacataaaaaccttacctgtttctactggttttctaggttgactctcgcttgtttttgcctttg |
32062736 |
T |
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