View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18505_high_6 (Length: 435)
Name: NF18505_high_6
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 4679352 - 4679030
Alignment:
| Q |
18 |
attctctggctaattgatagtataaagaatgaactaggaaaataagacttcgttaataaagtgtattattctgttcgtgaatccgtaaggatcgatatta |
117 |
Q |
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| T |
4679352 |
attctctggctaattgatagtataaagaatgaactaggaaaataagacttcgttaataaagtgtattattctgttcgtgaatccgtaaggatcgatatta |
4679253 |
T |
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| Q |
118 |
ggtcttggatggagggagttatgattatgacacacaactgttcagagattaaaagaagtacaaatgaaaaggtagaaatttaattgattttgcccccact |
217 |
Q |
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| T |
4679252 |
ggtcttggatggagggaattatgattatgacacacaactgtccagagattaaaagaagtacaaatgaaaaggtagaaatttaattgattttgcccccact |
4679153 |
T |
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| Q |
218 |
tagccccggatcaaaggacagtacaagttataaagagtaagaatgatctaaaaaattcttgagc---ctgatctcttccacccaaaagtaactgatcaat |
314 |
Q |
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| T |
4679152 |
tagccccggatcaaaggacagtacaagttataaagagtaagaatgatctaaaaaattccggagcctgctgatctcttccacccaaaagtaactgatcaat |
4679053 |
T |
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| Q |
315 |
aatttacccacctcaattatctc |
337 |
Q |
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| T |
4679052 |
aatttactcacctcaattatctc |
4679030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 334 - 425
Target Start/End: Complemental strand, 4678967 - 4678876
Alignment:
| Q |
334 |
tctcgaacactttaactaacagaagcaggccgacaagtctccttttgcccatccttatttcctcttacatatattgctaatagatccctatg |
425 |
Q |
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| T |
4678967 |
tctcgaacactttaactaacagaagcaggccgacaagtctccttttgcccatccttatttcctcttacatatattgctaatagatccctatg |
4678876 |
T |
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