View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18505_high_8 (Length: 386)

Name: NF18505_high_8
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18505_high_8
NF18505_high_8
[»] chr6 (13 HSPs)
chr6 (183-369)||(28016142-28016328)
chr6 (23-186)||(28015942-28016105)
chr6 (183-373)||(27915571-27915759)
chr6 (230-375)||(28033854-28033999)
chr6 (20-156)||(27915376-27915512)
chr6 (237-345)||(28000268-28000376)
chr6 (43-132)||(28089936-28090025)
chr6 (43-133)||(28033627-28033717)
chr6 (22-111)||(28532437-28532526)
chr6 (230-309)||(28090170-28090249)
chr6 (20-130)||(28071655-28071765)
chr6 (230-308)||(28073231-28073309)
chr6 (52-130)||(28000035-28000110)
[»] chr5 (2 HSPs)
chr5 (43-186)||(1438632-1438775)
chr5 (240-308)||(1438875-1438943)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 183 - 369
Target Start/End: Original strand, 28016142 - 28016328
Alignment:
Q  183 gtactacaggctgaatggaatagtcggcataatgctcctgaaagaacggttctcgagaatttgccagataatctccagatagacatacgacgttatatct 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  28016142 gtactacaggctgaatggaatagtcggcataatgctcctgaaagaacggttctcgagaatttgccagaaaacctccagatagacatacgacgttatatct 28016241  T
Q  283 tcaattttgttaaaaaagtatgcatttgaatattttaaagaagttcatgattattctttaaatgcattttaattatgattctctttt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  28016242 tcaattttgttaaaaaagtatgcatttgaatattttaaagaagttcatgattactctttaaaagcattttaattatgattctctttt 28016328  T

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Target: chr6; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 28015942 - 28016105
Alignment:
Q  23 aggagcctagaaatgatgcatagaggtcgtgatgttgagcaatggatgaaccatcatcgcttaccagaagatctcagaatgtatgaaatgttttaactct 122  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28015942 aggagcctagaaatgatgcatagaggttgtgatgttgagcaatggatgaaccatcatcggttaccagaagatctcagaatgtatgaaatgttttaactct 28016041  T
Q  123 tttaacgaatcctttcgacattgtcaaaatgcatatttcaataaatggagtatgcataatgtac 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28016042 tttaacgaatcctttcgacattgtcaaaatgcatatttcaataaatggagtatgcataatgtac 28016105  T

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Target: chr6; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 183 - 373
Target Start/End: Original strand, 27915571 - 27915759
Alignment:
Q  183 gtactacaggctgaatggaatagtcggcataatgctcctgaaagaacggttctcgagaatttgccagataatctccagatagacatacgacgttatatct 282  Q
    ||||||| |||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||  |||||||| ||||||    
T  27915571 gtactactggctgaatgggatagttggcataatgttcctgagagaacggttctcgagaatttgccaaaaaatctccagatagatctacgacgtcatatct 27915670  T
Q  283 tcaattttgttaaaaaagtatgcatttgaatattttaaagaagttcatgattattctttaaatgcattttaattatgattctcttttccct 373  Q
    |||  ||||||||||||||||||||||||| |||| |||||| ||||||| || |||||||||| |   ||||||||||||||||||||||    
T  27915671 tcagatttgttaaaaaagtatgcatttgaacatttaaaagaatttcatgaatactctttaaatgaa--ctaattatgattctcttttccct 27915759  T

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Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 375
Target Start/End: Original strand, 28033854 - 28033999
Alignment:
Q  230 ggttctcgagaatttgccagataatctccagatagacatacgacgttatatcttcaattttgttaaaaaagtatgcatttgaatattttaaagaagttca 329  Q
    |||||| ||||||||||||||  ||||||||| ||||||||||||| || ||||||| ||||||||||| ||||||||| ||| ||||||||||||||||    
T  28033854 ggttctggagaatttgccagaagatctccagacagacatacgacgtcatctcttcaaatttgttaaaaatgtatgcattggaacattttaaagaagttca 28033953  T
Q  330 tgattattctttaaatgcattttaattatgattctcttttccctat 375  Q
    |||||| |||||||||| |||||| ||||| |||||||||||||||    
T  28033954 tgattactctttaaatgaattttatttatggttctcttttccctat 28033999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 27915376 - 27915512
Alignment:
Q  20 tacaggagcctagaaatgatgcatagaggtcgtgatgttgagcaatggatgaaccatcatcgcttaccagaagatctcagaatgtatgaaatgttttaac 119  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||| ||| |||||| ||||||| |||||||||| |||||||||||||| |     
T  27915376 tacaggagcctagaaatgatacgtagaggccgtgatgttgagcaatggatgagccaccatcgcgtaccagacgatctcagaaggtatgaaatgttttgat 27915475  T
Q  120 tcttttaacgaatcctttcgacattgtcaaaatgcat 156  Q
    ||||||||||| ||   || |||||||||||||||||    
T  27915476 tcttttaacgagtctcatcaacattgtcaaaatgcat 27915512  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 28000268 - 28000376
Alignment:
Q  237 gagaatttgccagataatctccagatagacatacgacgttatatcttcaattttgttaaaaaagtatgcatttgaatattttaaagaagttcatgattat 336  Q
    ||||||||||||||  ||||||| ||||||||||||||| |||||||||| || |||||||||||||||||| ||| |||| ||| |||||||||||||     
T  28000268 gagaatttgccagaagatctccaaatagacatacgacgtcatatcttcaaattcgttaaaaaagtatgcattggaacatttgaaaaaagttcatgattac 28000367  T
Q  337 tctttaaat 345  Q
    |||||||||    
T  28000368 tctttaaat 28000376  T

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Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 28089936 - 28090025
Alignment:
Q  43 tagaggtcgtgatgttgagcaatggatgaaccatcatcgcttaccagaagatctcagaatgtatgaaatgttttaactcttttaacgaat 132  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||| ||| |||||||||||||    
T  28089936 tagaggccgtgatgttgagcaatggatgaaccatcgtcgcttaccagaagatcttaaaaggtatgaaatgttctaattcttttaacgaat 28090025  T

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Target: chr6; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 28033627 - 28033717
Alignment:
Q  43 tagaggtcgtgatgttgagcaatggatgaaccatcatcgcttaccagaagatctcagaatgtatgaaatgttttaactcttttaacgaatc 133  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||| ||| ||||||||| ||||    
T  28033627 tagaggccgtgatgttgagcaatggatgagccatcgtcgcttaccagaagatctcaaaaggtatgaaatgttctaattcttttaacaaatc 28033717  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 28532437 - 28532526
Alignment:
Q  22 caggagcctagaaatgatgcatagaggtcgtgatgttgagcaatggatgaaccatcatcgcttaccagaagatctcagaatgtatgaaat 111  Q
    |||||| ||||||||| | | |||| |||| |||||||||||||||||||  |||| ||| ||||| |||||||||| || |||||||||    
T  28532437 caggaggctagaaatgctacttagaagtcgcgatgttgagcaatggatgaggcatcgtcggttacctgaagatctcaaaaggtatgaaat 28532526  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 28090170 - 28090249
Alignment:
Q  230 ggttctcgagaatttgccagataatctccagatagacatacgacgttatatcttcaattttgttaaaaaagtatgcattt 309  Q
    |||||| || |||||||||||  ||||||||| ||||||| ||||  || ||||||| |||||||| |||||||||||||    
T  28090170 ggttctggaaaatttgccagaagatctccagacagacataagacgccatctcttcaaatttgttaataaagtatgcattt 28090249  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 28071655 - 28071765
Alignment:
Q  20 tacaggagcctagaaatgatgcatagaggtcgtgatgttgagcaatggatgaaccatcatcgcttaccagaagatctcagaatgtatgaaatgttttaac 119  Q
    |||||||| |||||||||||   |||||| || |||||||||||||||||||    || ||| |||||||||||||||| || || || ||| || ||||    
T  28071655 tacaggaggctagaaatgatatgtagaggccgcgatgttgagcaatggatgagaggtcgtcgtttaccagaagatctcaaaaggtttgtaatattctaac 28071754  T
Q  120 tcttttaacga 130  Q
    |||| ||||||    
T  28071755 tcttctaacga 28071765  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 28073231 - 28073309
Alignment:
Q  230 ggttctcgagaatttgccagataatctccagatagacatacgacgttatatcttcaattttgttaaaaaagtatgcatt 308  Q
    ||||||| |||||||||||||  ||||||||| ||||||| ||||  || ||| ||| |||||||| ||||||||||||    
T  28073231 ggttctcaagaatttgccagaagatctccagacagacataagacgccatctctacaaatttgttaataaagtatgcatt 28073309  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 28000035 - 28000110
Alignment:
Q  52 tgatgttgagcaatggatgaaccatcatcgcttaccagaagatctcagaatgtatgaaatgttttaactcttttaacga 130  Q
    |||||||||||||||||||| || || || |||||| ||| |||||| || ||   ||||||| |||||||||||||||    
T  28000035 tgatgttgagcaatggatgagccgtcgtcacttaccggaaaatctcaaaaggt---aaatgttctaactcttttaacga 28000110  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 1438632 - 1438775
Alignment:
Q  43 tagaggtcgtgatgttgagcaatggatgaaccatcatcgcttaccagaagatctcagaatgtatgaaatgttttaactcttttaacgaatcctttcgaca 142  Q
    |||||||||||||||||||||||||||||  ||||  ||||||||||||||||| |  | |||||||||||| ||  ||||||||||||||   || |||    
T  1438632 tagaggtcgtgatgttgagcaatggatgagtcatcgccgcttaccagaagatcttaagaggtatgaaatgttctatttcttttaacgaatcacatcaaca 1438731  T
Q  143 ttgtcaaaatgcatatttcaataaatggagtatgcataatgtac 186  Q
    ||| |||||  ||| | ||||  |||||| |||| |||||||||    
T  1438732 ttgccaaaacacatttatcaaataatggattatgtataatgtac 1438775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 1438875 - 1438943
Alignment:
Q  240 aatttgccagataatctccagatagacatacgacgttatatcttcaattttgttaaaaaagtatgcatt 308  Q
    |||||||||||  ||||||||| ||||||  ||||  || ||||||| ||||| |||||||||||||||    
T  1438875 aatttgccagaagatctccagaaagacattagacgccatctcttcaaatttgtaaaaaaagtatgcatt 1438943  T

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