View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18505_low_1 (Length: 824)

Name: NF18505_low_1
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18505_low_1
NF18505_low_1
[»] chr5 (14 HSPs)
chr5 (16-405)||(32228562-32228952)
chr5 (485-807)||(32229032-32229347)
chr5 (13-278)||(33169413-33169679)
chr5 (13-154)||(24407708-24407849)
chr5 (16-246)||(26072651-26072881)
chr5 (20-105)||(25824773-25824859)
chr5 (509-575)||(40445975-40446041)
chr5 (44-105)||(42927918-42927979)
chr5 (179-262)||(24407856-24407939)
chr5 (20-105)||(35984083-35984169)
chr5 (514-578)||(24408492-24408556)
chr5 (515-586)||(11310443-11310514)
chr5 (31-105)||(28535967-28536042)
chr5 (510-577)||(39610342-39610409)
[»] chr4 (10 HSPs)
chr4 (16-278)||(19740159-19740422)
chr4 (13-278)||(46145430-46145696)
chr4 (44-105)||(7403700-7403761)
chr4 (514-578)||(43034342-43034406)
chr4 (515-578)||(7248334-7248397)
chr4 (511-586)||(48067127-48067202)
chr4 (509-579)||(43722757-43722827)
chr4 (515-581)||(44221445-44221511)
chr4 (515-572)||(12698595-12698652)
chr4 (509-578)||(14202479-14202548)
[»] chr3 (12 HSPs)
chr3 (13-246)||(963314-963548)
chr3 (13-278)||(3140607-3140873)
chr3 (13-88)||(50651657-50651733)
chr3 (515-581)||(46298052-46298118)
chr3 (517-578)||(45885477-45885538)
chr3 (516-578)||(27397612-27397674)
chr3 (509-586)||(51250225-51250302)
chr3 (20-103)||(40930822-40930906)
chr3 (514-572)||(7829893-7829951)
chr3 (514-575)||(37921001-37921062)
chr3 (511-572)||(43796843-43796904)
chr3 (514-575)||(47943295-47943356)
[»] chr6 (8 HSPs)
chr6 (13-246)||(13937455-13937689)
chr6 (56-248)||(18682654-18682846)
chr6 (44-105)||(24767716-24767777)
chr6 (55-105)||(18651526-18651576)
chr6 (509-577)||(3358383-3358451)
chr6 (511-572)||(1918464-1918525)
chr6 (48-105)||(5734533-5734590)
chr6 (64-105)||(12427979-12428020)
[»] chr1 (12 HSPs)
chr1 (13-246)||(2490967-2491201)
chr1 (25-105)||(23635015-23635095)
chr1 (40-104)||(23713699-23713764)
chr1 (509-576)||(7803397-7803464)
chr1 (516-578)||(6000143-6000205)
chr1 (509-577)||(5279371-5279439)
chr1 (45-105)||(13352102-13352162)
chr1 (61-105)||(26059695-26059739)
chr1 (548-584)||(46335053-46335089)
chr1 (510-577)||(3777711-3777778)
chr1 (505-575)||(28832174-28832244)
chr1 (511-572)||(15382825-15382886)
[»] chr7 (12 HSPs)
chr7 (55-105)||(235731-235781)
chr7 (516-577)||(19578138-19578199)
chr7 (509-576)||(19626527-19626594)
chr7 (62-105)||(37919349-37919392)
chr7 (515-578)||(43680990-43681053)
chr7 (513-579)||(7791896-7791962)
chr7 (512-578)||(44651496-44651562)
chr7 (514-579)||(1399159-1399224)
chr7 (517-578)||(19599145-19599206)
chr7 (508-581)||(34448607-34448680)
chr7 (514-571)||(44558781-44558838)
chr7 (56-105)||(47876782-47876831)
[»] chr2 (12 HSPs)
chr2 (514-560)||(6723095-6723141)
chr2 (513-578)||(43117190-43117255)
chr2 (514-578)||(10723936-10724000)
chr2 (514-578)||(27411089-27411153)
chr2 (519-586)||(3904204-3904271)
chr2 (515-578)||(25186242-25186305)
chr2 (510-577)||(36359307-36359374)
chr2 (515-577)||(40967372-40967434)
chr2 (517-578)||(12413493-12413554)
chr2 (517-578)||(12425553-12425614)
chr2 (517-578)||(29734691-29734752)
chr2 (517-578)||(41859852-41859913)
[»] chr8 (5 HSPs)
chr8 (514-586)||(42200654-42200726)
chr8 (31-105)||(9922374-9922449)
chr8 (547-577)||(1212265-1212295)
chr8 (67-105)||(32567557-32567595)
chr8 (515-576)||(27134422-27134483)
[»] scaffold0122 (1 HSPs)
scaffold0122 (511-578)||(14186-14253)
[»] scaffold0334 (1 HSPs)
scaffold0334 (517-578)||(5182-5243)


Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 32228562 - 32228952
Alignment:
Q  16 atccaaacacacaggagccaaattagatg-aaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataaact 114  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32228562 atccaaacacacaggagccaaattagatggaaaaaggaacgtcgcgctctcaaacaacctgcataattaataaattgcaagaaatgatctgttataaact 32228661  T
Q  115 gagtcttgaccccaacaacacctaaccaagctcgcaccaacagccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgacatg 214  Q
    ||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  32228662 gagtcttgatcccaacaacacctagccaagctcgcaccaacggccacaacgcaccaaagtaaagacaaaacagaaatatatgattcagatcctcgacatg 32228761  T
Q  215 gccacatccatcaatgcaagaccgcgcctccacatgtaagatcccacggagtgccaaattttgtctttgtaagggggttaagaccatgtgccttatctac 314  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||| ||||    
T  32228762 gccacacccatcaatgcaagaccgcgcctccacatgtaagatcccacggagtgccaaattttgtctttgtaagggggtaaagaccatacgccttaactac 32228861  T
Q  315 atcccaaaaccaatctatatcttcttaatttttgaggtctattattcttttacaattgttgatgcatttaacgattttctagtacttctag 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32228862 atcccaaaaccaatctatatcttcttaatttttgaggtctattattcttttacaattgttgatgcatttaacgattttctagtacttctag 32228952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 485 - 807
Target Start/End: Original strand, 32229032 - 32229347
Alignment:
Q  485 cttatatttaaacttactacttcaatgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccctgatca 584  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||    
T  32229032 cttatatttaaacttactacttcaatgttctcgtgagcttaactaagttgattttgaccttgcataatatatgcaatgtctggggttcaaaccctgacca 32229131  T
Q  585 ccnnnnnnnnnnnnnnncttactacttcaatctagatctttgttgcaacatgggtatcaaaattcgacaacaatgacaaatcgggaattccttcaccaaa 684  Q
                     |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  32229132 -------aaaaaaaaaacttactacttcaatctagatctttgttgcaacatgtttatcaaaattcgacaacaatgacaaatcgggaattccttcaccaaa 32229224  T
Q  685 tccatgctcttactcgtgaactagtacattctgctccttctcgtgcactccgaccacagccacattcacgtcttggaggagcatttgcctctcgctctct 784  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32229225 tccatgctcttactcgtgaactagtacattctgctccttctcgtgcactccgaccacaaccacattcacgtcttggaggagcatttgcctctcgctctct 32229324  T
Q  785 acaaatggaattatacaaggtct 807  Q
    ||||| |||||||||||||||||    
T  32229325 acaaacggaattatacaaggtct 32229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 33169413 - 33169679
Alignment:
Q  13 aatatccaaacacacaggagccaaattagatg-aaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataa 111  Q
    ||||||||||||||||| |||||||||||||| ||||||||| | || ||||||| || ||||||||||||||||||||| |  ||||| |||||||| |    
T  33169413 aatatccaaacacacagaagccaaattagatggaaaaaggaacgccgtgctctcataccacctgcataattaataaattgcagaaaatggtctgttatga 33169512  T
Q  112 actgagtcttgaccccaacaacacctaaccaagctcgcaccaacagccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgac 211  Q
    ||||||| | ||| ||||||||||| | |||||||||||||| | ||||||||||| ||||||| |||||||||| ||||| ||||||||| ||||||||    
T  33169513 actgagtttcgactccaacaacaccaagccaagctcgcaccatcggccacaacgcatcaaagtacggacaagacaaaaataaatgattcaggtcctcgac 33169612  T
Q  212 atggccacatccatcaatgcaagaccgcgcctccacatgtaagatcccacggagtgccaaattttgt 278  Q
    ||| ||||| ||||  ||||| |||||| |||||| |  ||||| ||||||   |||||||||||||    
T  33169613 atgcccacacccatttatgcatgaccgctcctccaaagataagaccccacgacttgccaaattttgt 33169679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 24407708 - 24407849
Alignment:
Q  13 aatatccaaacacacaggagccaaattagatgaaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataaa 112  Q
    ||||||||||||||||  ||||||||| ||||||||| ||| |||| |||||| | | ||||||||||||||||||||| ||| | || ||| |||||||    
T  24407708 aatatccaaacacacaaaagccaaattcgatgaaaaaagaacgtcgtgctctcgagccacctgcataattaataaattgcaaggagtggtcttttataaa 24407807  T
Q  113 ctgagtcttgaccccaacaacacctaaccaagctcgcaccaa 154  Q
    |||| | |  |||||||||||||| | |||||||||||||||    
T  24407808 ctgattttctaccccaacaacaccaagccaagctcgcaccaa 24407849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 26072651 - 26072881
Alignment:
Q  16 atccaaacacacaggagccaaattagatgaaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataaactg 115  Q
    |||||||||||||||||||| || || |||||||   ||| |||| | ||||||  |||||||||| ||||||||| |||||||| ||||  |||| |||    
T  26072651 atccaaacacacaggagccatataaggtgaaaaaacgatgccgcgatttcaaaccgcctgcataatgaataaattgcaagaaatggtctgaaataacctg 26072750  T
Q  116 agtcttgaccccaacaacacctaaccaagctcgcaccaacagccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgacatgg 215  Q
    ||  | ||||||  ||||||| | ||| |  | ||||||  ||||||||||||||||  |||||||||||||||| | |||||| |  |||  ||||||     
T  26072751 agattcgaccccttcaacaccgagccatgaccacaccaatggccacaacgcaccaaaagaaggacaagacagaaacagatgattgatgtccatgacatgt 26072850  T
Q  216 ccacatccatcaatgcaagaccgcgcctcca 246  Q
    ||||| |||||||| ||  |||| |||||||    
T  26072851 ccacacccatcaatacacaaccgtgcctcca 26072881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 25824773 - 25824859
Alignment:
Q  20 aaacacacaggagccaaattagatgaaa-aaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    ||||||| || |||||||| | |||||| || ||| ||||| ||||| ||||||||||||||||||||||||| || ||||||||||    
T  25824773 aaacacaaagcagccaaatcaaatgaaagaaagaacgtcgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctg 25824859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 509 - 575
Target Start/End: Original strand, 40445975 - 40446041
Alignment:
Q  509 atgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaa 575  Q
    |||| |||||||||||||||||||||||  ||||  || ||||||||||||| ||||||||||||||    
T  40445975 atgtcctcgtgagtttaactcagttgataaggacaatgcataatatatgcaaggtctgaggttcaaa 40446041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 42927918 - 42927979
Alignment:
Q  44 gaaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    |||||| ||| ||||| ||||| ||||||||||||||||||||||||| || ||||||||||    
T  42927918 gaaaaatgaacgtcgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctg 42927979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 24407856 - 24407939
Alignment:
Q  179 acaagacagaaatatatgattcagatcctcgacatggccacatccatcaatgcaagaccgcgcctccacatgtaagatcccacg 262  Q
    |||||||| ||||| ||||||||| ||||||||||| ||||| ||||| ||||| || ||||||||| ||  ||||| ||||||    
T  24407856 acaagacaaaaatagatgattcaggtcctcgacatgcccacacccatctatgcatgatcgcgcctccgcaaataagaccccacg 24407939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 35984169 - 35984083
Alignment:
Q  20 aaacacacaggagccaaattagatgaaa-aaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    ||||||| || |||||||| | |||||| || ||| ||||| ||||| ||||||||||||||||||||||||| |  ||||||||||    
T  35984169 aaacacaaagcagccaaatcaaatgaaagaaagaacgtcgccctctcgaacaacctgcataattaataaattgcataaaatgatctg 35984083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 578
Target Start/End: Original strand, 24408492 - 24408556
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    |||||||| ||| |||||||| |||||||  || ||||||||||||| ||||| |||||||||||    
T  24408492 ctcgtgagcttagctcagttggtttggacgatgcataatatatgcaaggtctggggttcaaaccc 24408556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 586
Target Start/End: Complemental strand, 11310514 - 11310443
Alignment:
Q  515 tcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccctgatcacc 586  Q
    ||||||| ||| |||||||| |||||||  ||||||||||||||||  |||| |||| ||||||||| ||||    
T  11310514 tcgtgagcttagctcagttggtttggacaatgtataatatatgcaagatctggggtttaaaccctgaccacc 11310443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 28536042 - 28535967
Alignment:
Q  31 agccaaattagatgaaa-aaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    |||||||| | |||||| |||||| ||||| ||||| ||||||| ||||||||||||||||| |  ||||||||||    
T  28536042 agccaaatcaaatgaaagaaggaacgtcgccctctcgaacaaccagcataattaataaattgcacaaaatgatctg 28535967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 577
Target Start/End: Complemental strand, 39610409 - 39610342
Alignment:
Q  510 tgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaacc 577  Q
    |||||||||||| ||| |||||||||| |||||  || |||||||||||||||| ||  |||||||||    
T  39610409 tgttctcgtgagcttagctcagttgatatggacaatgcataatatatgcaatgtttggagttcaaacc 39610342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 3e-75; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 19740422 - 19740159
Alignment:
Q  16 atccaaacacacaggagccaaattagat-gaaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataaact 114  Q
    ||||||||||||| |||||||||||||| ||||||||||||  |||||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||    
T  19740422 atccaaacacacaagagccaaattagatagaaaaaggaatgatgcgctctcaaaccacctacataattaataaattgtaagaaatggtctgctataaact 19740323  T
Q  115 gagtcttgaccccaacaacacctaaccaagctcgcaccaacagccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgacatg 214  Q
    |||| | ||||||||| ||||| | |||||||||||||| |  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  19740322 gagtttcgaccccaaccacaccaagccaagctcgcaccatcgaccacaacgcaccaaagtaaggacaagacaaaaatagatgattcagatcctcgacatc 19740223  T
Q  215 gccacatccatcaatgcaagaccgcgcctccacatgtaagatcccacggagtgccaaattttgt 278  Q
     ||||||||||||||||| |||||||| |||| |  ||||| ||||||   |||||||||||||    
T  19740222 cccacatccatcaatgcatgaccgcgcatccaaagataagaccccacgacttgccaaattttgt 19740159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 46145430 - 46145696
Alignment:
Q  13 aatatccaaacacacaggagccaaattagatg-aaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataa 111  Q
    ||||||||||||||||  |||||||||||||| ||||| ||| | || ||||||| || ||||||||||||||||||||| || ||||| |||||||| |    
T  46145430 aatatccaaacacacataagccaaattagatggaaaaaagaacgccgtgctctcataccacctgcataattaataaattgcaaaaaatggtctgttatga 46145529  T
Q  112 actgagtcttgaccccaacaacacctaaccaagctcgcaccaacagccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgac 211  Q
    ||||||| | ||||||||||||||| | |||||||||||||| | |||||||| || ||||||| |||||||||| ||||| ||||||||  ||||||||    
T  46145530 actgagtttcgaccccaacaacaccaagccaagctcgcaccatcggccacaacacatcaaagtacggacaagacaaaaatagatgattcaagtcctcgac 46145629  T
Q  212 atggccacatccatcaatgcaagaccgcgcctccacatgtaagatcccacggagtgccaaattttgt 278  Q
    ||| ||||| ||||  ||||| |||| |||||||| |  ||||| ||||||   |||||||||||||    
T  46145630 atgcccacacccatttatgcatgaccacgcctccaaagataagaccccacgacttgccaaattttgt 46145696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 7403700 - 7403761
Alignment:
Q  44 gaaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    |||||| ||| ||||| ||||| ||||||||||||||||||||||||| || ||||||||||    
T  7403700 gaaaaaagaacgtcgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctg 7403761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 578
Target Start/End: Complemental strand, 43034406 - 43034342
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    |||||||| |||||||||||| | |||||  || ||||||||||||| |||||||||||||||||    
T  43034406 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtctgaggttcaaaccc 43034342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 578
Target Start/End: Original strand, 7248334 - 7248397
Alignment:
Q  515 tcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||||||||||||||||| ||||  || |||| |||||||| ||||  |||||||||||    
T  7248334 tcgtgagtttaactcagttgattgggacaatgcataaaatatgcaaggtctagggttcaaaccc 7248397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 586
Target Start/End: Original strand, 48067127 - 48067202
Alignment:
Q  511 gttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccctgatcacc 586  Q
    ||||||||||||| |||||||||| |  ||||  |||||||||||||||| |  ||||||||||| || |||||||    
T  48067127 gttctcgtgagttaaactcagttggtagggacaatgtataatatatgcaaggcatgaggttcaaatcccgatcacc 48067202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 509 - 579
Target Start/End: Original strand, 43722757 - 43722827
Alignment:
Q  509 atgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccct 579  Q
    |||| ||||||||||||||||||||| | |||||  || |||||||||| || ||| | ||||||||||||    
T  43722757 atgtcctcgtgagtttaactcagttggtatggacaatgcataatatatgtaaggtccggggttcaaaccct 43722827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 581
Target Start/End: Original strand, 44221445 - 44221511
Alignment:
Q  515 tcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccctga 581  Q
    ||||||| |||| ||||||| | |||||  || ||||||||||||| ||||||||||| ||||||||    
T  44221445 tcgtgagcttaattcagttggtatggacaatgcataatatatgcaaggtctgaggttcgaaccctga 44221511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 572
Target Start/End: Original strand, 12698595 - 12698652
Alignment:
Q  515 tcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttc 572  Q
    ||||||| ||| ||||||||||||||||  || ||||||||||||| ||||| |||||    
T  12698595 tcgtgagcttagctcagttgatttggacaatgcataatatatgcaaggtctggggttc 12698652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 578
Target Start/End: Complemental strand, 14202548 - 14202479
Alignment:
Q  509 atgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    |||| |||||||| |||||||||||||||||||   || |||||||||| || ||| | |||||||||||    
T  14202548 atgtcctcgtgagcttaactcagttgatttggataatgcataatatatgtaaggtccggggttcaaaccc 14202479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 3e-53; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 963548 - 963314
Alignment:
Q  13 aatatccaaacacacaggagccaaattagatg-aaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataa 111  Q
    ||||||||||||||||| |||||||||||||| ||||||||| | || ||||||| || |||| |||||||||||||||| || ||||| |||||||| |    
T  963548 aatatccaaacacacagaagccaaattagatggaaaaaggaacgccgtgctctcataccacctacataattaataaattgcaaaaaatggtctgttatga 963449  T
Q  112 actgagtcttgaccccaacaacacctaaccaagctcgcaccaacagccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgac 211  Q
    ||||||| | ||| ||||||| ||| | |||||||||||||| | ||||||||||| ||||||| |||||||||| ||||| ||||||||| ||||||||    
T  963448 actgagtttcgactccaacaagaccaagccaagctcgcaccatcggccacaacgcatcaaagtacggacaagacaaaaatagatgattcaggtcctcgac 963349  T
Q  212 atggccacatccatcaatgcaagaccgcgcctcca 246  Q
    ||| ||||| ||||  ||||| |||||| ||||||    
T  963348 atgcccacacccatttatgcatgaccgctcctcca 963314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 3140607 - 3140873
Alignment:
Q  13 aatatccaaacacacaggagccaaattagatg-aaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataa 111  Q
    ||||||||||||||||| ||||||||||| || ||||| ||| || | |||||||||  ||||||||||||||||||||| || ||||| ||| |||| |    
T  3140607 aatatccaaacacacagaagccaaattagttggaaaaaagaacgttgtgctctcaaatcacctgcataattaataaattgcaaaaaatggtcttttatga 3140706  T
Q  112 actgagtcttgaccccaacaacacctaaccaagctcgcaccaacagccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgac 211  Q
    ||||||| | ||||||||||||||| | |||||||||||||| | ||||||||||||||||||| |||||| ||| ||||| |||||  || | |||| |    
T  3140707 actgagtttcgaccccaacaacaccaagccaagctcgcaccatcggccacaacgcaccaaagtacggacaatacaaaaatagatgatctaggttctcggc 3140806  T
Q  212 atggccacatccatcaatgcaagaccgcgcctccacatgtaagatcccacggagtgccaaattttgt 278  Q
    ||| ||||| ||||| ||||| ||| || |||||| |  ||||| ||||||   |||||||||||||    
T  3140807 atgcccacacccatctatgcatgactgcacctccaaagataagaccccacgacttgccaaattttgt 3140873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 50651733 - 50651657
Alignment:
Q  13 aatatccaaacacacaggagccaaattagatga-aaaaggaatgtcgcgctctcaaacaacctgcataattaataaa 88  Q
    ||||||||||||||||| ||||||||||||||| |||| ||  |||| |||||||||| ||||||||||||||||||    
T  50651733 aatatccaaacacacagcagccaaattagatgaaaaaaagaccgtcgtgctctcaaaccacctgcataattaataaa 50651657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 581
Target Start/End: Complemental strand, 46298118 - 46298052
Alignment:
Q  515 tcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccctga 581  Q
    ||||||||||| |||||||| ||||||   || ||||||||||||||||| ||||||||||||||||    
T  46298118 tcgtgagtttagctcagttggtttggataatgcataatatatgcaatgtccgaggttcaaaccctga 46298052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 517 - 578
Target Start/End: Complemental strand, 45885538 - 45885477
Alignment:
Q  517 gtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||| ||| |||||||| | ||||||||| ||||||||||||| |||||||||||||||||    
T  45885538 gtgagcttagctcagttggtatggaccttgcataatatatgcaaggtctgaggttcaaaccc 45885477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 578
Target Start/End: Complemental strand, 27397674 - 27397612
Alignment:
Q  516 cgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||||||||||||| | |||||  |||||||||||||||| |||| |||||| |||||    
T  27397674 cgtgagtttaactcagttggtatggacaatgtataatatatgcaaggtctaaggttcgaaccc 27397612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 586
Target Start/End: Complemental strand, 51250302 - 51250225
Alignment:
Q  509 atgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccctgatcacc 586  Q
    |||| |||||||| |||||||||||| |  ||||  |||||||||||||||| | |||| |||||||||| |||||||    
T  51250302 atgtcctcgtgagcttaactcagttggtaaggacaatgtataatatatgcaaggcctgaagttcaaaccccgatcacc 51250225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 40930906 - 40930822
Alignment:
Q  20 aaacacacaggagccaaattagatgaaa-aaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatc 103  Q
    ||||||| || |||||||| | |||||| || ||| ||| | ||||| ||||||||||||||||||||||||| || ||||||||    
T  40930906 aaacacaaagcagccaaatcaaatgaaagaaagaacgtcaccctctcgaacaacctgcataattaataaattgcaaaaaatgatc 40930822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 572
Target Start/End: Original strand, 7829893 - 7829951
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttc 572  Q
    ||||||||||||||||||||||| |||||  || |||||||||| || |||||| ||||    
T  7829893 ctcgtgagtttaactcagttgatatggacaatgcataatatatgtaaggtctgaagttc 7829951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 575
Target Start/End: Complemental strand, 37921062 - 37921001
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaa 575  Q
    |||||||||||| ||||||||||  |||   || ||||||||||||||||||| ||||||||    
T  37921062 ctcgtgagtttagctcagttgatagggataatgcataatatatgcaatgtctgcggttcaaa 37921001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 572
Target Start/End: Complemental strand, 43796904 - 43796843
Alignment:
Q  511 gttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttc 572  Q
    |||| |||||| |||||||||||| | |||||  ||||||||| |||||| |||||||||||    
T  43796904 gttcccgtgagcttaactcagttggtatggacaatgtataatacatgcaaagtctgaggttc 43796843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 575
Target Start/End: Original strand, 47943295 - 47943356
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaa 575  Q
    |||||||| |||||||||||| || ||||  || |||| |||||||| ||||||||||||||    
T  47943295 ctcgtgagcttaactcagttggttgggacagtgcataaaatatgcaaggtctgaggttcaaa 47943356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 5e-46; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 13937455 - 13937689
Alignment:
Q  13 aatatccaaacacacaggagccaaattagatg-aaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataa 111  Q
    ||||||||||||||||  |||||||||||||| ||||| ||| |||| ||||||| || ||||||||||||||||||||| || ||||| |||||||| |    
T  13937455 aatatccaaacacacaaaagccaaattagatggaaaaaagaacgtcgtgctctcataccacctgcataattaataaattgcaaaaaatggtctgttatga 13937554  T
Q  112 actgagtcttgaccccaacaacacctaaccaagctcgcaccaacagccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgac 211  Q
    ||||||| | ||||| | ||||||  | ||||||| |||||| | ||||||||||| ||||||| |||||||||  ||||| ||||||||| ||||||||    
T  13937555 actgagtttcgaccctagcaacactaagccaagcttgcaccatcggccacaacgcatcaaagtatggacaagaccaaaatagatgattcaggtcctcgac 13937654  T
Q  212 atggccacatccatcaatgcaagaccgcgcctcca 246  Q
    ||| ||||| ||||  ||||| |||||| ||||||    
T  13937655 atgcccacacccatttatgcatgaccgctcctcca 13937689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 56 - 248
Target Start/End: Complemental strand, 18682846 - 18682654
Alignment:
Q  56 tcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataaactgagtcttgaccccaacaacacctaaccaagctcgcaccaac 155  Q
    ||||| |||||||| ||||||||||||||| ||||| |||||||| ||||  |||| |||||  | ||||||||| |  || | |||||   | ||||||    
T  18682846 tcgcgatctcaaaccacctgcataattaatgaattgcaagaaatggtctgaaataacctgagattcgaccccaactatgccaagccaagactgaaccaac 18682747  T
Q  156 agccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgacatggccacatccatcaatgcaagaccgcgcctccaca 248  Q
     |||||| ||||||||| || |||||||||| ||| | || ||| | |||||| ||||| ||||| ||||| ||||| ||||| |||||||||    
T  18682746 ggccacagcgcaccaaaatacggacaagacaaaaacagataattgacatcctccacatgcccacacccatctatgcatgaccgtgcctccaca 18682654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 24767777 - 24767716
Alignment:
Q  44 gaaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||    
T  24767777 gaaaaaagaatgtcgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctg 24767716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 18651576 - 18651526
Alignment:
Q  55 gtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    ||||| ||||| ||||||||||||||||||||||||| || ||||||||||    
T  18651576 gtcgccctctcgaacaacctgcataattaataaattgcaacaaatgatctg 18651526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 509 - 577
Target Start/End: Original strand, 3358383 - 3358451
Alignment:
Q  509 atgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaacc 577  Q
    |||| |||||||  |||||||||||| |||||||  || ||||||||||||| ||| ||||||||||||    
T  3358383 atgtcctcgtgaacttaactcagttggtttggacaatgcataatatatgcaaagtccgaggttcaaacc 3358451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 572
Target Start/End: Complemental strand, 1918525 - 1918464
Alignment:
Q  511 gttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttc 572  Q
    |||||||||||||||||||||||| | | |||  || ||||||||||||| ||| |||||||    
T  1918525 gttctcgtgagtttaactcagttggtatagacaatgcataatatatgcaaggtccgaggttc 1918464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 5734590 - 5734533
Alignment:
Q  48 aaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    |||||| || || ||||| ||||||||||||||||||||||||| |  ||||||||||    
T  5734590 aaggaacgttgccctctcgaacaacctgcataattaataaattgcacaaaatgatctg 5734533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 12428020 - 12427979
Alignment:
Q  64 tcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    |||||| ||||||||||||||||||||| ||||| |||||||    
T  12428020 tcaaaccacctgcataattaataaattgcaagaagtgatctg 12427979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 2490967 - 2491201
Alignment:
Q  13 aatatccaaacacacaggagccaaattagatg-aaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctgttataa 111  Q
    ||||||||||||||||| |||||||||||||| ||||| ||  |||| |||||| ||| |||||||||||||||||| || ||  |||| |||||||| |    
T  2490967 aatatccaaacacacagcagccaaattagatggaaaaaagatcgtcgtgctctcgaaccacctgcataattaataaactgcaaacaatggtctgttatga 2491066  T
Q  112 actgagtcttgaccccaacaacacctaaccaagctcgcaccaacagccacaacgcaccaaagtaaggacaagacagaaatatatgattcagatcctcgac 211  Q
    ||||||| | ||||||| ||||||| | |||||||| ||||| | ||||||||||||||||||| |||||||||||||| | |||||| |  ||||||||    
T  2491067 actgagtttcgaccccatcaacaccaagccaagctcacaccatcggccacaacgcaccaaagtacggacaagacagaaaaagatgattgacgtcctcgac 2491166  T
Q  212 atggccacatccatcaatgcaagaccgcgcctcca 246  Q
    |   ||||| ||| | ||||| |||||||||||||    
T  2491167 aaacccacacccagctatgcatgaccgcgcctcca 2491201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 23635095 - 23635015
Alignment:
Q  25 cacaggagccaaattagatgaaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    |||| |||||| || ||||||||| |||  |||||| | |||||| ||||||||||||||||||||| |||||||||||||    
T  23635095 cacaagagccatatcagatgaaaagggatcgtcgcgatttcaaactacctgcataattaataaattgcaagaaatgatctg 23635015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 23713764 - 23713699
Alignment:
Q  40 agatgaaaaaggaat-gtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatct 104  Q
    |||||||||||| || |||||| | |||||| ||||||||||||||||||||| ||||||||||||    
T  23713764 agatgaaaaagggatcgtcgcgatttcaaactacctgcataattaataaattgcaagaaatgatct 23713699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 509 - 576
Target Start/End: Original strand, 7803397 - 7803464
Alignment:
Q  509 atgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaac 576  Q
    |||| |||||||| |||||||||||  | |||||  |||||||||||||||| |||||||||||||||    
T  7803397 atgtcctcgtgagattaactcagtttgtatggacaatgtataatatatgcaaggtctgaggttcaaac 7803464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 578
Target Start/End: Complemental strand, 6000205 - 6000143
Alignment:
Q  516 cgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||||||||||||| || ||||  || ||||||||||||| ||| |||||||||||||    
T  6000205 cgtgagtttaactcagttggttaggacaatgcataatatatgcaaggtccgaggttcaaaccc 6000143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 509 - 577
Target Start/End: Complemental strand, 5279439 - 5279371
Alignment:
Q  509 atgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaacc 577  Q
    |||| ||||||||||||||||||| | | |||||  || |||||||||||||||||||  |||||||||    
T  5279439 atgtcctcgtgagtttaactcagtcggtatggacaatgcataatatatgcaatgtctggagttcaaacc 5279371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 13352102 - 13352162
Alignment:
Q  45 aaaaaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    ||||| ||| ||||| ||||| ||||||||||||||||||||||||  || ||||||||||    
T  13352102 aaaaatgaacgtcgctctctcgaacaacctgcataattaataaattacaaaaaatgatctg 13352162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 26059695 - 26059739
Alignment:
Q  61 ctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||    
T  26059695 ctctcgaacaacctgcataattaataaattgcaaaaaatgatctg 26059739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 548 - 584
Target Start/End: Complemental strand, 46335089 - 46335053
Alignment:
Q  548 ataatatatgcaatgtctgaggttcaaaccctgatca 584  Q
    ||||||||||||| |||||||||||||||||||||||    
T  46335089 ataatatatgcaaggtctgaggttcaaaccctgatca 46335053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 577
Target Start/End: Original strand, 3777711 - 3777778
Alignment:
Q  510 tgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaacc 577  Q
    |||||||||||| |||||||||||||| ||||   |||||||||||| ||| ||  ||||||||||||    
T  3777711 tgttctcgtgagcttaactcagttgatatggataatgtataatatatacaaggttcgaggttcaaacc 3777778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 505 - 575
Target Start/End: Complemental strand, 28832244 - 28832174
Alignment:
Q  505 ttcaatgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaa 575  Q
    |||| |||||| ||||| |||||||||||| | || ||  || ||||||||||||| ||||||||||||||    
T  28832244 ttcattgttcttgtgagcttaactcagttggtatgaacaatgcataatatatgcaaggtctgaggttcaaa 28832174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 572
Target Start/End: Complemental strand, 15382886 - 15382825
Alignment:
Q  511 gttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttc 572  Q
    ||||| ||||| |||||||||||||| || ||  |||||||||||||||| ||| |||||||    
T  15382886 gttcttgtgagcttaactcagttgatatgaacaatgtataatatatgcaaggtccgaggttc 15382825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 235781 - 235731
Alignment:
Q  55 gtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    ||||| ||||| ||||||||||||||||||||||||| || ||||||||||    
T  235781 gtcgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctg 235731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 19578199 - 19578138
Alignment:
Q  516 cgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaacc 577  Q
    ||||||||||||||||||||||| |||  || |||| |||||||| ||||| ||||||||||    
T  19578199 cgtgagtttaactcagttgattttgacaatgcataaaatatgcaaggtctggggttcaaacc 19578138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 576
Target Start/End: Complemental strand, 19626594 - 19626527
Alignment:
Q  509 atgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaac 576  Q
    |||| |||||||| |||||||||||| |||||||  || ||||||||||||| ||| | |||||||||    
T  19626594 atgtcctcgtgagcttaactcagttggtttggacaatgcataatatatgcaaggtccggggttcaaac 19626527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 37919349 - 37919392
Alignment:
Q  62 tctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    ||||||||||||||| |||||||||||||| || ||||||||||    
T  37919349 tctcaaacaacctgcgtaattaataaattgcaaaaaatgatctg 37919392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 578
Target Start/End: Complemental strand, 43681053 - 43680990
Alignment:
Q  515 tcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||||||||||||||||| ||||  || |||| |||||||| ||||  |||||||||||    
T  43681053 tcgtgagtttaactcagttgattgggacaatgcataaaatatgcaaggtctagggttcaaaccc 43680990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 579
Target Start/End: Original strand, 7791896 - 7791962
Alignment:
Q  513 tctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccct 579  Q
    ||||||||| ||| |||||||| |||||||  ||  |||||||||||| |||||||||| |||||||    
T  7791896 tctcgtgagcttagctcagttggtttggacaatgcgtaatatatgcaaggtctgaggtttaaaccct 7791962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 512 - 578
Target Start/End: Original strand, 44651496 - 44651562
Alignment:
Q  512 ttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    |||||||||||||| |||||||| | ||||||||| |||| ||||| || || || |||||||||||    
T  44651496 ttctcgtgagtttagctcagttggtatggaccttgcataaaatatgtaaggtttggggttcaaaccc 44651562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 579
Target Start/End: Original strand, 1399159 - 1399224
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccct 579  Q
    ||||||||||||||||||||| | |||||  || || |||||||||| ||||||| ||| ||||||    
T  1399159 ctcgtgagtttaactcagttggtatggacaatgcatgatatatgcaaggtctgagattcgaaccct 1399224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 19599145 - 19599206
Alignment:
Q  517 gtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    |||||||||||||||||| | |||||  || ||||||||||||| ||| | |||||||||||    
T  19599145 gtgagtttaactcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccc 19599206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 581
Target Start/End: Complemental strand, 34448680 - 34448607
Alignment:
Q  508 aatgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccctga 581  Q
    ||||| |||||||| |||||||||||| |||||||  || |||||||||| || |||   ||||||||||||||    
T  34448680 aatgtcctcgtgagcttaactcagttggtttggacaatgcataatatatgtaaggtccagggttcaaaccctga 34448607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 571
Target Start/End: Complemental strand, 44558838 - 44558781
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggtt 571  Q
    |||||||||||| |||||||| | |||||  || ||||||||||||| ||||||||||    
T  44558838 ctcgtgagtttagctcagttggtatggacaatgcataatatatgcaaggtctgaggtt 44558781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 47876782 - 47876831
Alignment:
Q  56 tcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    |||| ||||| ||||||||||||||||||||||||| || |||| |||||    
T  47876782 tcgccctctcgaacaacctgcataattaataaattgcaaaaaataatctg 47876831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 560
Target Start/End: Complemental strand, 6723141 - 6723095
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaa 560  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||||    
T  6723141 ctcgtgagtttaactcagttgatatggacaatgtataatatatgcaa 6723095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 578
Target Start/End: Complemental strand, 43117255 - 43117190
Alignment:
Q  513 tctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||||||| |||||||| |  ||||  || ||||||||||||| |||||||||||||||||    
T  43117255 tctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaaggtctgaggttcaaaccc 43117190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 578
Target Start/End: Original strand, 10723936 - 10724000
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    |||||||| |||||||||||| |||||    || ||||||||||||| |||||||||||||||||    
T  10723936 ctcgtgagcttaactcagttggtttgggtaatgcataatatatgcaaggtctgaggttcaaaccc 10724000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 578
Target Start/End: Original strand, 27411089 - 27411153
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    |||||||| ||| |||||||||| ||||||||| ||||||||||||| ||| | ||||| |||||    
T  27411089 ctcgtgagcttagctcagttgatatggaccttgcataatatatgcaaggtccggggttcgaaccc 27411153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 586
Target Start/End: Original strand, 3904204 - 3904271
Alignment:
Q  519 gagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccctgatcacc 586  Q
    |||||||||| |||||||  ||||  || |||||||||| || ||||| |||||||||||||||||||    
T  3904204 gagtttaacttagttgatagggacaatgcataatatatgtaaggtctggggttcaaaccctgatcacc 3904271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 578
Target Start/End: Complemental strand, 25186305 - 25186242
Alignment:
Q  515 tcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||||| |||||||||| |||||  || ||||||||||||| ||| | |||||||||||    
T  25186305 tcgtgagtttagctcagttgatatggacaatgcataatatatgcaaggtccggggttcaaaccc 25186242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 577
Target Start/End: Original strand, 36359307 - 36359374
Alignment:
Q  510 tgttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaacc 577  Q
    ||||||| |||| ||||||| ||||||||||||  || ||||||||||||| ||| | ||||||||||    
T  36359307 tgttctcatgagcttaactcggttgatttggacaatgcataatatatgcaaggtccggggttcaaacc 36359374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 577
Target Start/End: Complemental strand, 40967434 - 40967372
Alignment:
Q  515 tcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaacc 577  Q
    ||||||| ||||||||||||||  ||||  || ||||||||||||| || |||||||||||||    
T  40967434 tcgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtttgaggttcaaacc 40967372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 12413493 - 12413554
Alignment:
Q  517 gtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||| ||| ||||||  ||||  || ||||||||||||| |||||||||||||||||    
T  12413493 gtgagtttatctcggttgataaggacaatgcataatatatgcaaggtctgaggttcaaaccc 12413554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 12425553 - 12425614
Alignment:
Q  517 gtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||| ||| ||||||  ||||  || ||||||||||||| |||||||||||||||||    
T  12425553 gtgagtttatctcggttgataaggacaatgcataatatatgcaaggtctgaggttcaaaccc 12425614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 29734691 - 29734752
Alignment:
Q  517 gtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||| |||||||||| |||||  || ||||||||||||| ||| | |||||||||||    
T  29734691 gtgagtttagctcagttgatatggacaatgcataatatatgcaaggtccgtggttcaaaccc 29734752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 41859852 - 41859913
Alignment:
Q  517 gtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    |||||||||||||||||| | |||||  || |||| |||||||| ||||| |||||||||||    
T  41859852 gtgagtttaactcagttggtatggacaatgcataaaatatgcaaggtctggggttcaaaccc 41859913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 586
Target Start/End: Complemental strand, 42200726 - 42200654
Alignment:
Q  514 ctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccctgatcacc 586  Q
    |||||||| ||| ||||||||||  ||||  |||||||||||||||  |||||||||||||||| || |||||    
T  42200726 ctcgtgagcttagctcagttgatagggacaatgtataatatatgcatggtctgaggttcaaaccttggtcacc 42200654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 9922374 - 9922449
Alignment:
Q  31 agccaaattagatgaaa-aaggaatgtcgcgctctcaaacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    |||||||| | |||||| |||||| ||||| ||||| |||| |||||||||||||||||||| |  ||||||||||    
T  9922374 agccaaatcaaatgaaagaaggaacgtcgccctctcgaacatcctgcataattaataaattgcactaaatgatctg 9922449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 547 - 577
Target Start/End: Original strand, 1212265 - 1212295
Alignment:
Q  547 tataatatatgcaatgtctgaggttcaaacc 577  Q
    |||||||||||||||||||||||||||||||    
T  1212265 tataatatatgcaatgtctgaggttcaaacc 1212295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 32567595 - 32567557
Alignment:
Q  67 aacaacctgcataattaataaattgtaagaaatgatctg 105  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  32567595 aacaacctgcataattaataaattgcaaaaaatgatctg 32567557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 576
Target Start/End: Complemental strand, 27134483 - 27134422
Alignment:
Q  515 tcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaac 576  Q
    |||||||||||||||||||| | || ||  |||||||||||||||| ||| | |||||||||    
T  27134483 tcgtgagtttaactcagttggtatgaacaatgtataatatatgcaaagtccggggttcaaac 27134422  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 578
Target Start/End: Complemental strand, 14253 - 14186
Alignment:
Q  511 gttctcgtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    |||||||||||||||||||||||| | || ||  || ||||||||||||| || || |||||||||||    
T  14253 gttctcgtgagtttaactcagttggtatgaacaatgcataatatatgcaaggtatgtggttcaaaccc 14186  T

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Target: scaffold0334 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 5182 - 5243
Alignment:
Q  517 gtgagtttaactcagttgatttggaccttgtataatatatgcaatgtctgaggttcaaaccc 578  Q
    ||||||||| |||| ||| | |||||  || ||||||||||||| |||||||||||||||||    
T  5182 gtgagtttagctcaattggtatggacaatgcataatatatgcaaggtctgaggttcaaaccc 5243  T

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