View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18505_low_11 (Length: 344)

Name: NF18505_low_11
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18505_low_11
NF18505_low_11
[»] chr6 (31 HSPs)
chr6 (36-243)||(5692048-5692255)
chr6 (242-331)||(5100771-5100860)
chr6 (242-331)||(5135872-5135961)
chr6 (36-243)||(5133842-5134049)
chr6 (74-243)||(5104847-5105016)
chr6 (251-331)||(5351662-5351742)
chr6 (77-243)||(5075709-5075875)
chr6 (77-243)||(5368318-5368484)
chr6 (75-244)||(5183928-5184097)
chr6 (77-243)||(5356594-5356760)
chr6 (77-243)||(5423611-5423777)
chr6 (141-243)||(5286165-5286267)
chr6 (49-243)||(5394901-5395095)
chr6 (134-243)||(5069106-5069215)
chr6 (134-243)||(5348269-5348378)
chr6 (130-243)||(5341552-5341665)
chr6 (142-243)||(5444941-5445042)
chr6 (75-243)||(5148938-5149106)
chr6 (134-243)||(5093899-5094008)
chr6 (134-243)||(5159536-5159645)
chr6 (141-243)||(5262185-5262287)
chr6 (130-243)||(5431265-5431378)
chr6 (292-331)||(5398379-5398418)
chr6 (242-288)||(5098464-5098510)
chr6 (282-331)||(5242389-5242438)
chr6 (59-243)||(5174724-5174908)
chr6 (242-290)||(5242506-5242554)
chr6 (292-335)||(5352737-5352780)
chr6 (297-331)||(5439361-5439395)
chr6 (245-290)||(5156007-5156052)
chr6 (245-290)||(5372353-5372398)
[»] chr4 (13 HSPs)
chr4 (35-243)||(25567861-25568067)
chr4 (75-243)||(4126413-4126581)
chr4 (50-222)||(4330368-4330540)
chr4 (50-243)||(4342800-4342993)
chr4 (130-243)||(4358268-4358381)
chr4 (135-243)||(4323138-4323246)
chr4 (75-243)||(4333410-4333578)
chr4 (49-212)||(4351120-4351283)
chr4 (160-243)||(7888807-7888890)
chr4 (185-243)||(4135630-4135688)
chr4 (242-288)||(25569096-25569142)
chr4 (242-290)||(4132612-4132660)
chr4 (242-290)||(4319296-4319344)
[»] chr2 (1 HSPs)
chr2 (73-243)||(22586289-22586459)
[»] chr7 (1 HSPs)
chr7 (75-154)||(36215868-36215947)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 243
Target Start/End: Original strand, 5692048 - 5692255
Alignment:
Q  36 tattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctc 135  Q
    ||||||||||| | |||||||| ||||| ||||||| | ||||||||||||||||  | |||| ||| |  |||||| | ||||||| || |||||||      
T  5692048 tattttttcctgcatcaatgttttgtatattggtcgttgtttctttgcaaatatcggagagaagttgttgctgtaaagatacttgtccaacattttgcat 5692147  T
Q  136 ccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctccc 235  Q
    |||||||||||| |||||||| | ||||||| | || ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  5692148 ccaaacttcccttatatttgcaaggaagctccttccttcaaaattgcggccaattttattgtaaatggcttttgcaatggtggttttgccaattcctccc 5692247  T
Q  236 atacccca 243  Q
    || |||||    
T  5692248 atgcccca 5692255  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 5100860 - 5100771
Alignment:
Q  242 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccactgatga 331  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100860 cagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccactgatga 5100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 5135961 - 5135872
Alignment:
Q  242 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccactgatga 331  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5135961 cagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccaatgatga 5135872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 243
Target Start/End: Original strand, 5133842 - 5134049
Alignment:
Q  36 tattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctc 135  Q
    |||||||||||  ||||||||| |||||||| || |  |||||||||   |||||| | |||| ||| |||||||| | |||||| | || |||| ||||    
T  5133842 tattttttcctgactcaatgttttgtatcttagttgtcatttctttgttgatatcaaacagaagttgttcttgtaattccacttgaccaaaatttcgctc 5133941  T
Q  136 ccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctccc 235  Q
    ||||||||||||||||||||| | ||||||| |||| ||||||| | ||||||||||||||||||||||||| ||||| || ||||| ||||  ||||||    
T  5133942 ccaaacttccctaatatttgcaaggaagctcctaccttcaaaatcgcggccaattttattgtaaatggctttcgcaatggttgttttaccaacgcctccc 5134041  T
Q  236 atacccca 243  Q
    ||||||||    
T  5134042 atacccca 5134049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 5104847 - 5105016
Alignment:
Q  74 atttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccat 173  Q
    ||||||||||| |||||| | |||| ||  |||||||||| |||  | | || |||||||||||||||||||||||||||||| | ||||||  ||||||    
T  5104847 atttctttgcagatatcaaagagaagtttttcttgtaaattcacccggccaacattttgctcccaaacttccctaatatttgcaaggaagcttctaccat 5104946  T
Q  174 caaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    ||||||| |||||||||||||||||||| ||||| ||||| || ||||| ||||  ||||||||||||||    
T  5104947 caaaattatggccaattttattgtaaatagctttggcaatggttgttttaccaactcctcccatacccca 5105016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 5351662 - 5351742
Alignment:
Q  251 tgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccactgatga 331  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351662 tgtgaaaaagacagtagtttatctcgtatatgatgaaccatctgtcaagagattctctactgaagaggagcccactgatga 5351742  T

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Target: chr6; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 5075709 - 5075875
Alignment:
Q  77 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 176  Q
    ||||||||||||||| | |||| ||| ||||||||| | ||  ||| |  ||||||||||||||||||||| |||||||| | ||||||| ||||  |||    
T  5075709 tctttgcaaatatcaaaaagaagttgttcttgtaaacaaaccggtccatcattttgctcccaaacttccctgatatttgcaaggaagctcctacctgcaa 5075808  T
Q  177 aattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    | ||  | ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||    
T  5075809 atttacgaccaattttattgtaaatggcttttgcaatggtggttttaccaatcccacccatacccca 5075875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 5368484 - 5368318
Alignment:
Q  77 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 176  Q
    |||||||| |||||| | |||| ||| |||||||||| ||||| || |  ||||| |||||||||||||||||||||||| | ||||||  |||| ||||    
T  5368484 tctttgcagatatcaaagagaagttgttcttgtaaattcacttttccagcattttcctcccaaacttccctaatatttgcaaggaagcttctaccttcaa 5368385  T
Q  177 aattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    ||||| ||||||||||||||||||| ||||| ||||| || ||||| ||||  || |||||||||||    
T  5368384 aattgcggccaattttattgtaaatagctttggcaatggttgttttaccaactccccccatacccca 5368318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 5183928 - 5184097
Alignment:
Q  75 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 174  Q
    |||| ||||| |||||| | |||||||| | ||||||||| | | ||| || |||||||||||||||||||||||||||||| | ||||||| |||| ||    
T  5183928 tttcattgcatatatcaaagagaatttgtttttgtaaatatattggtccaacattttgctcccaaacttccctaatatttgcaaggaagctcctaccctc 5184027  T
Q  175 aaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccataccccag 244  Q
    ||||||| | ||||||| ||||||||||| ||| || |  || ||||| ||||| |||||||||||||||    
T  5184028 aaaattgcgaccaatttcattgtaaatggatttggctaacgttgttttaccaatacctcccataccccag 5184097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 5356594 - 5356760
Alignment:
Q  77 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 176  Q
    |||||||| |||||| | |||| ||| |||||||||| |||||| | |   |||| |||||||||||||||||||||||| | ||||||  |||||||||    
T  5356594 tctttgcagatatcagagagaagttgttcttgtaaattcacttggccagctttttcctcccaaacttccctaatatttgcaaggaagcttctaccatcaa 5356693  T
Q  177 aattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    ||| | ||||||||||||||||||| |||||| | || || ||||| ||||  ||||||||||||||    
T  5356694 aatcgcggccaattttattgtaaatagcttttccgatggttgttttgccaactcctcccatacccca 5356760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 5423777 - 5423611
Alignment:
Q  77 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 176  Q
    |||||||| |||||| | |||| ||| |||||||||| ||||| || |  ||||| |||||||||||||||||||||||| | ||||||  |||| ||||    
T  5423777 tctttgcatatatcaaagagaagttgttcttgtaaattcacttttccagcattttcctcccaaacttccctaatatttgcaaggaagcttctaccttcaa 5423678  T
Q  177 aattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    ||||| | ||||||||||||||||| ||||| ||||| || ||||| ||||  || |||||||||||    
T  5423677 aattgcgaccaattttattgtaaatagctttggcaatggttgttttaccaactccccccatacccca 5423611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 5286165 - 5286267
Alignment:
Q  141 cttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacc 240  Q
    ||||||| |||||||| | ||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||| || ||||||||||| || ||||||||    
T  5286165 cttcccttatatttgcaaggaagctcctaccatcaaaattgcggccaatcttattgtaaatggcttttgtaatggttgtttttccaattccccccatacc 5286264  T
Q  241 cca 243  Q
    |||    
T  5286265 cca 5286267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 5395095 - 5394901
Alignment:
Q  49 ctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttcccta 148  Q
    ||||||||| |||||||| |||    ||||||||||||||||| | |||| ||| | |||||| |  ||  ||| || |||||||||||| |||||||||    
T  5395095 ctcaatgttttgtatcttagtcttcgtttctttgcaaatatcaaagagaagttgtttttgtaagtcaaccggtccaacattttgctcccacacttcccta 5394996  T
Q  149 atatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    |||||||| | ||||||| |||| ||||||||| | |||||| | ||||| |||||||| || |  |||||||| ||||| ||||||||||||||    
T  5394995 atatttgcaaggaagctcctaccctcaaaattgcgaccaattctgttgtatatggctttggctaaggtggttttaccaatacctcccatacccca 5394901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 5069106 - 5069215
Alignment:
Q  134 tcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctc 233  Q
    ||||||||||||||||||||||| | ||||||  |||| ||||||||| ||||||||||||||||||| ||||| ||||| || ||||| ||||  ||||    
T  5069106 tcccaaacttccctaatatttgcaaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgttttaccaactcctc 5069205  T
Q  234 ccatacccca 243  Q
    ||||||||||    
T  5069206 ccatacccca 5069215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 5348378 - 5348269
Alignment:
Q  134 tcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctc 233  Q
    ||||||||||||||||||||||| | ||||||  |||| ||||||||| ||||||||||||||||||| ||||| ||||| || ||||| ||||  ||||    
T  5348378 tcccaaacttccctaatatttgcaaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgttttaccaactcctc 5348279  T
Q  234 ccatacccca 243  Q
    ||||||||||    
T  5348278 ccatacccca 5348269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 5341665 - 5341552
Alignment:
Q  130 ttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatc 229  Q
    ||||||||||||||||||||||||||| | ||| ||| |||| ||||| |||||||||| |||||| |||||||||||  |||| || || || |||||     
T  5341665 ttgctcccaaacttccctaatatttgcaaggaaactcctaccttcaaagttgtggccaagtttattataaatggctttcacaatggtagtcttaccaatt 5341566  T
Q  230 cctcccatacccca 243  Q
    ||||||||||||||    
T  5341565 cctcccatacccca 5341552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 5445042 - 5444941
Alignment:
Q  142 ttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccataccc 241  Q
    ||||||||||||||||| ||||||| | || ||||||||| ||||| | ||||||||||||||||||||||| || |||||||| ||||| ||||| |||    
T  5445042 ttccctaatatttgcgaggaagctcctgccttcaaaattgcggccagtcttattgtaaatggcttttgcaattgttgtttttccgatcccccccatgccc 5444943  T
Q  242 ca 243  Q
    ||    
T  5444942 ca 5444941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 5148938 - 5149106
Alignment:
Q  75 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 174  Q
    |||| |||||||||||| | |||| ||| | ||||||| |||| |||| |  ||||| | ||||||| |||||||||||| | |  || ||| |||| ||    
T  5148938 tttccttgcaaatatcaaagagaagttgttgttgtaaagacacatgtccatcatttttcgcccaaacctccctaatatttcctagaaaactcctaccttc 5149037  T
Q  175 aaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
     |||||| |||||||||||||||| |||||||||||||| |||| ||| ||||| || |||||||||||    
T  5149038 gaaattgcggccaattttattgtagatggcttttgcaatggtggatttgccaattccccccatacccca 5149106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 5094008 - 5093899
Alignment:
Q  134 tcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctc 233  Q
    |||||||||||||||| |||||| | ||||||| |||| ||||||||  ||||||||| ||| || || ||||||||||| || ||||| |||||||| |    
T  5094008 tcccaaacttccctaacatttgcaaggaagctcctaccttcaaaattacggccaatttcattatagatagcttttgcaatggttgttttaccaatccccc 5093909  T
Q  234 ccatacccca 243  Q
    ||||||||||    
T  5093908 ccatacccca 5093899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 5159536 - 5159645
Alignment:
Q  134 tcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctc 233  Q
    |||||||||||||||| |||||| | ||||||| |||| ||||||||  ||||||||| ||| || || ||||||||||| || ||||| |||||||| |    
T  5159536 tcccaaacttccctaacatttgcaaggaagctcctaccttcaaaattacggccaatttcattatagatagcttttgcaatggttgttttgccaatccccc 5159635  T
Q  234 ccatacccca 243  Q
    ||||||||||    
T  5159636 ccatacccca 5159645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 5262185 - 5262287
Alignment:
Q  141 cttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacc 240  Q
    ||||||| |||||||| | ||||||| | |||||||||||| ||||||| ||||||||||||||||| | ||| || ||||| ||||| || ||||||||    
T  5262185 cttcccttatatttgcaaggaagctccttccatcaaaattgcggccaatcttattgtaaatggctttcgtaatggttgttttgccaattccccccatacc 5262284  T
Q  241 cca 243  Q
    |||    
T  5262285 cca 5262287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 5431378 - 5431265
Alignment:
Q  130 ttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatc 229  Q
    |||||||||||||||||||| |||||| | ||| ||| | || ||||| ||| |||| |||| ||| ||||| |||||||||||||| |||||||| ||     
T  5431378 ttgctcccaaacttccctaacatttgcaaggaaactcctcccttcaaacttgcggccgatttcattataaattgcttttgcaatagttgtttttccgatt 5431279  T
Q  230 cctcccatacccca 243  Q
    || |||||||||||    
T  5431278 ccccccatacccca 5431265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 5398379 - 5398418
Alignment:
Q  292 ctgtcaagagattctctactgaagaggagcccactgatga 331  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  5398379 ctgtcaagagattctctactgaagatgagcccactgatga 5398418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 5098464 - 5098510
Alignment:
Q  242 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaac 288  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||    
T  5098464 cagtttcattgtgaaaaagacagcagtttatctggtatatgatgaac 5098510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 5242438 - 5242389
Alignment:
Q  282 gatgaaccatctgtcaagagattctctactgaagaggagcccactgatga 331  Q
    |||||||  ||||||||||||||||||||||||||||||||  |||||||    
T  5242438 gatgaacgctctgtcaagagattctctactgaagaggagcctgctgatga 5242389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 5174908 - 5174724
Alignment:
Q  59 tgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcga 158  Q
    ||||||||||||||  || ||||  | |||||| |||||| ||| | |||||||| |||||||| |  |  |||| ||||||||||||||||||| |  |    
T  5174908 tgtatcttggtcgacgttcctttaaagatatcagatagaagttgttgttgtaaatccacttgtccagcaggttgcccccaaacttccctaatattgggaa 5174809  T
Q  159 cgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
     ||||||| |||| ||||||||  | || ||||| ||| ||||  |||| || |  || ||||| ||||| ||||||||||||||    
T  5174808 tgaagctcctaccttcaaaattacgaccgattttgttgaaaatatctttggctaaggtagttttaccaatacctcccatacccca 5174724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 5242554 - 5242506
Alignment:
Q  242 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 290  Q
    |||||||| |||||| ||||||| ||||||||||||||| |||||||||    
T  5242554 cagtttcattgtgaagaagacagtagtttatctcgtatatgatgaacca 5242506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 5352780 - 5352737
Alignment:
Q  292 ctgtcaagagattctctactgaagaggagcccactgatgatgtc 335  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||    
T  5352780 ctgtcaagagattctctattgaagaggagcacactgaagatgtc 5352737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 5439361 - 5439395
Alignment:
Q  297 aagagattctctactgaagaggagcccactgatga 331  Q
    |||||||||||||||| ||||||||||||||||||    
T  5439361 aagagattctctactggagaggagcccactgatga 5439395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 5156052 - 5156007
Alignment:
Q  245 tttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 290  Q
    ||||| |||||| |||||| |||||||||| |||||||||||||||    
T  5156052 tttcattgtgaagaagacaacagtttatcttgtatacgatgaacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 5372353 - 5372398
Alignment:
Q  245 tttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 290  Q
    ||||| |||||| |||||| || |||||||||||||||||||||||    
T  5372353 tttcattgtgaagaagacaacaatttatctcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 25568067 - 25567861
Alignment:
Q  35 ttattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgct 134  Q
    |||||||||||||||||||| || || ||||||||||   |||||||||||| |||| | ||||| || ||||||||  |||| || | || |||||| |    
T  25568067 ttattttttccttcctcaatattttgaatcttggtcgtcgtttctttgcaaacatcaaagagaatctgttcttgtaacgacacctgaccaacattttgtt 25567968  T
Q  135 cccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcc 234  Q
    |||| ||||| ||||||||||| |  |||||| |||  ||| |||||  |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  25567967 cccagacttctctaatatttgccaaaaagctcctacattcataattg--gccaattttattgtaaatggcttttgcaatggtggttttgccaatccctcc 25567870  T
Q  235 catacccca 243  Q
    |||||||||    
T  25567869 catacccca 25567861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 4126413 - 4126581
Alignment:
Q  75 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 174  Q
    |||||||| |||||||| | | || ||| ||||||||||||||||||| |  |  |||||||||||| ||||| |||||||| |  |||||| |||| ||    
T  4126413 tttctttgaaaatatcatacataagttgttcttgtaaatacacttgtccagaaacttgctcccaaacctcccttatatttgcaagaaagctcctaccttc 4126512  T
Q  175 aaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    ||||||  ||||||||||||||||||||||||||||||| |||||||| ||||| || ||||| |||||    
T  4126513 aaaattccggccaattttattgtaaatggcttttgcaatggtggttttaccaattccacccatccccca 4126581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 4330540 - 4330368
Alignment:
Q  50 tcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaa 149  Q
    |||||||| ||||||||||| |  ||||||||| |||||||| | | || ||| ||||||||||| ||||||| |  |  |||||||||||| |||||||    
T  4330540 tcaatgttttgtatcttggttgtgatttctttgaaaatatcatacataagttgttcttgtaaatagacttgtctagaaacttgctcccaaacctccctaa 4330441  T
Q  150 tatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 222  Q
    ||||||| |  |||||| |||| ||||||||| ||||||||||||| |||||||| |||||||| ||| ||||    
T  4330440 tatttgcaagaaagctcctaccttcaaaattgcggccaattttattataaatggcctttgcaatggtgatttt 4330368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 4342993 - 4342800
Alignment:
Q  50 tcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaa 149  Q
    |||||||| ||||||||||| | | |||||||| ||||||||   | || ||| |||||||||||||||||||    |  |||||||||||| |||||||    
T  4342993 tcaatgttttgtatcttggtagttgtttctttgaaaatatcatgcataagttgttcttgtaaatacacttgtcctgaaacttgctcccaaacctccctaa 4342894  T
Q  150 tatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    ||||||| |  |||||| |  | ||||||||| | ||||||||||||||||||||||||||||| |||||||| || || || ||||| |||||    
T  4342893 tatttgcaagaaagctcctggcttcaaaattgcgaccaattttattgtaaatggcttttgcaatggtggttttccccattccacccatccccca 4342800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 4358381 - 4358268
Alignment:
Q  130 ttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatc 229  Q
    |||||||||||| |||||||||||| | |  |||||| |||| ||||||||| | ||||||||||||||||||| ||||||||| ||||||||||| ||     
T  4358381 ttgctcccaaacctccctaatattttcaagaaagctcctaccttcaaaattgcgaccaattttattgtaaatggattttgcaatggtggtttttccgatt 4358282  T
Q  230 cctcccatacccca 243  Q
    || ||||| |||||    
T  4358281 ccacccatccccca 4358268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 4323138 - 4323246
Alignment:
Q  135 cccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcc 234  Q
    ||||||| |||||||||||||| |  |||||| |||| ||||||||| | |||||||||||||||||||| |||||||  |||||||||||||| || ||    
T  4323138 cccaaacctccctaatatttgcaataaagctcctaccttcaaaattgcgaccaattttattgtaaatggcctttgcaacggtggtttttccaattccacc 4323237  T
Q  235 catacccca 243  Q
    ||| |||||    
T  4323238 catccccca 4323246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 243
Target Start/End: Complemental strand, 4333578 - 4333410
Alignment:
Q  75 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 174  Q
    |||||||| |||||||| | | || ||| ||||||| || |||||| | |  || || ||||||||| |||||||||||||| |  |||||| |||| |     
T  4333578 tttctttgaaaatatcatacataagttgttcttgtagattcacttgaccataatctttctcccaaacctccctaatatttgcaagaaagctcctaccttg 4333479  T
Q  175 aaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    ||| ||| |||||||||||||||||||||| || ||||| |||||||| |||||||| ||||| |||||    
T  4333478 aaatttgcggccaattttattgtaaatggccttcgcaattgtggttttcccaatcccacccatccccca 4333410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 4351283 - 4351120
Alignment:
Q  49 ctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttcccta 148  Q
    ||||||||| |||||||| || | | |||||||| ||||||||  || || ||| | |||||||| |  ||||| |  |  |||||||| ||| ||||||    
T  4351283 ctcaatgttttgtatctttgttgttgtttctttgaaaatatcatctataagttgtttttgtaaatgctgttgtccagaaacttgctccccaacctcccta 4351184  T
Q  149 atatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaa 212  Q
    |||||||| |  || ||| |||| ||||||||| ||||||||||||||||||||||||||||||    
T  4351183 atatttgcaagaaaactcctaccttcaaaattgcggccaattttattgtaaatggcttttgcaa 4351120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 7888807 - 7888890
Alignment:
Q  160 gaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    |||||||||  |||||||||  || | |||||||||||||| |||||| ||||  || ||||| |||||||||||||| |||||    
T  7888807 gaagctctttgcatcaaaatcatgacgaattttattgtaaacggctttagcaagggttgttttcccaatccctcccatgcccca 7888890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 4135630 - 4135688
Alignment:
Q  185 ccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    |||| ||||||||||| || |||||||||||| ||||| ||||| ||| ||||||||||    
T  4135630 ccaactttattgtaaacggattttgcaatagttgttttaccaataccttccatacccca 4135688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 25569096 - 25569142
Alignment:
Q  242 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaac 288  Q
    ||||||||| ||||| || ||| ||||||||||||||||||||||||    
T  25569096 cagtttcaaagtgaagaatacaacagtttatctcgtatacgatgaac 25569142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 4132660 - 4132612
Alignment:
Q  242 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 290  Q
    |||||||| |||||  |||||||||||||||||| |||| |||||||||    
T  4132660 cagtttcattgtgatgaagacagcagtttatctcatatatgatgaacca 4132612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 4319344 - 4319296
Alignment:
Q  242 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 290  Q
    |||||||| |||||  |||||||||||||||||| |||| |||||||||    
T  4319344 cagtttcattgtgatgaagacagcagtttatctcatatatgatgaacca 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 243
Target Start/End: Original strand, 22586289 - 22586459
Alignment:
Q  73 tatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttacca 172  Q
    ||||||||| || |||||| ||| || ||| |||||||||  || ||||| |  || ||||| ||||||||||||||||||||| | ||||||| ||||     
T  22586289 tatttctttacagatatcagataaaagttgttcttgtaaaaccatttgtctaccatcttgcttccaaacttccctaatatttgcaaggaagctcctacct 22586388  T
Q  173 tcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 243  Q
    ||||| | | ||||||| ||||||||||  ||||||||||| || ||||| ||||  || |||||||||||    
T  22586389 tcaaactcgcggccaatcttattgtaaacagcttttgcaatggttgttttgccaaatccccccatacccca 22586459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 36215868 - 36215947
Alignment:
Q  75 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatattt 154  Q
    ||||||||||||||||| | |||| ||| | ||||||| ||||||||| || ||||| ||||||||| |||||| |||||    
T  36215868 tttctttgcaaatatcaaagagaagttgttgttgtaaagacacttgtccaacatttttctcccaaacctccctagtattt 36215947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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