View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18505_low_12 (Length: 341)
Name: NF18505_low_12
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_low_12 |
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| [»] scaffold0652 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 6777929 - 6778251
Alignment:
| Q |
1 |
aacccagttttcttttttcattcttaactagactatactctcactctagctttgttcccaattatgttgatgttgataacgctatttcttcattcaacag |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6777929 |
aacccagttttcttttttcattcttaacaagactatactctcactctagctttgttcccaattatgttgatgttgataacgctatttcttcattcaacag |
6778028 |
T |
|
| Q |
101 |
tttttccatcgaatttgaatctcgattctgattaacactacctagccagaagcaatgttgaagaaagctttcgaaacccctcgcttcttcgggttccgcc |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6778029 |
tttttccatcgaatttgaatctccattctgattaacactacctagccagaagcaatgttgaagaaagctttcgaaacccctcgcttcttcgggttccgcc |
6778128 |
T |
|
| Q |
201 |
gcaaccacaacaattctctcacatcctcttccgttagttccgaccaacgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagcta |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6778129 |
gcaaccacaacaattctctcacaacctcttccgttagttccgaccaacgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagcta |
6778228 |
T |
|
| Q |
301 |
cgaaccttattgcttggttaacc |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6778229 |
cgaaccttattgcttggttaacc |
6778251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 70 - 323
Target Start/End: Complemental strand, 17489080 - 17488827
Alignment:
| Q |
70 |
atgttgataacgctatttcttcattcaacagtttttccatcgaatttgaatctcgattctgattaacactacctagccagaagcaatgttgaagaaagct |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17489080 |
atgttgataacgctatttcttcattcaacagtttttccatcgaatttgaatctcgattctgattaacactacctaaccagaagcaatgttgaagaaagct |
17488981 |
T |
|
| Q |
170 |
ttcgaaacccctcgcttcttcgggttccgccgcaaccacaacaattctctcacatcctcttccgttagttccgaccaacgaggtattcgtttctgcatct |
269 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17488980 |
ttcggaacccctcgctttttcgggttccgccgcaaccacaacaattctctcacaacctcttccgttagttccgaccaacgaggtattcgtttctgcatct |
17488881 |
T |
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| Q |
270 |
gggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaacc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17488880 |
gggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaacc |
17488827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 102 - 323
Target Start/End: Original strand, 43095484 - 43095700
Alignment:
| Q |
102 |
ttttccatcgaatttgaatctcgattctgattaacactacctagccagaagcaatgttgaagaaagctttcgaaacccctcgcttcttcgggttccgccg |
201 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
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| T |
43095484 |
ttttctatcgaatttaaatctcgattctgattaacactacc-----agaagcaatgttgaagaaagttttcaaaaccccttgcttcttcgggttccgccg |
43095578 |
T |
|
| Q |
202 |
caaccacaacaattctctcacatcctcttccgttagttccgaccaacgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctac |
301 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43095579 |
caaccacaacaattctctcacaacctcttccgttagttccgatcaacgaggtattcgtttctgcatttgggtagctctcaaatttgagaatcttagcttt |
43095678 |
T |
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| Q |
302 |
gaaccttattgcttggttaacc |
323 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43095679 |
gaaccttattgcttggttaacc |
43095700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0652 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0652
Description:
Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 6516 - 6469
Alignment:
| Q |
30 |
agactatactctcactctagctttgttcccaattatgttgatgttgat |
77 |
Q |
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|||||||||||||| ||| |||||||||||| | |||||||||||||| |
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| T |
6516 |
agactatactctcaatctcgctttgttcccagtaatgttgatgttgat |
6469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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