View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18505_low_16 (Length: 252)

Name: NF18505_low_16
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18505_low_16
NF18505_low_16
[»] chr2 (3 HSPs)
chr2 (1-252)||(2681802-2682053)
chr2 (163-233)||(37713572-37713642)
chr2 (155-188)||(2680220-2680253)
[»] chr4 (2 HSPs)
chr4 (162-243)||(36366669-36366750)
chr4 (1-81)||(36366503-36366583)
[»] chr8 (5 HSPs)
chr8 (163-251)||(23189886-23189974)
chr8 (163-251)||(23182509-23182597)
chr8 (160-242)||(15805167-15805249)
chr8 (205-251)||(15812999-15813045)
chr8 (176-240)||(15722337-15722401)
[»] chr3 (1 HSPs)
chr3 (162-252)||(3103479-3103569)
[»] chr7 (2 HSPs)
chr7 (162-251)||(20294828-20294917)
chr7 (163-233)||(20243801-20243871)
[»] chr1 (1 HSPs)
chr1 (160-236)||(47619488-47619564)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2682053 - 2681802
Alignment:
Q  1 tcagactttgggatggctagaatatttggcagagatcaaactgaagcaaatacactgagagttgttggaacatagtgagtagtgcaatgtttcataacag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2682053 tcagactttgggatggctagaatatttggcagagatcaaactgaagcaaatacactgagagttgttggaacatagtgagtagtgcaatgtttcataacag 2681954  T
Q  101 tactccttaataaaataccaaatataaaataacttatcattttgtatgttttgttaatgtacagtggctatatgtctcctgaatatgctatggacggaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2681953 tactccttaataaaataccaaatataaaataacttatcattttgtatgttttgttaatgtacagtggctatatgtctcctgaatatgctatggacggaaa 2681854  T
Q  201 cttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2681853 cttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatc 2681802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 37713642 - 37713572
Alignment:
Q  163 agtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttgg 233  Q
    ||||| ||||||||||| || |||||| |||| |||  ||| ||| | |||||||||||||||||||||||    
T  37713642 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttgg 37713572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 2680220 - 2680253
Alignment:
Q  155 taatgtacagtggctatatgtctcctgaatatgc 188  Q
    ||||||||||||| ||||||||||||||||||||    
T  2680220 taatgtacagtggttatatgtctcctgaatatgc 2680253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 36366669 - 36366750
Alignment:
Q  162 cagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtg 243  Q
    |||||||||||||||||| || ||||||||||| |||| ||||||||| ||||| |||||||| || ||||| |||||||||    
T  36366669 cagtggctatatgtctccagagtatgctatggatggaatcttctcagtgaaatctgatgttttcagttttggtgttcttgtg 36366750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 36366503 - 36366583
Alignment:
Q  1 tcagactttgggatggctagaatatttggcagagatcaaactgaagcaaatacactgagagttgttggaacatagtgagta 81  Q
    |||||||| |||||||| |||||||||||||  ||||| || || ||||||||| | ||||||||||||||||||| ||||    
T  36366503 tcagacttcgggatggcaagaatatttggcacggatcagacagaggcaaatacagttagagttgttggaacatagtaagta 36366583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 23189886 - 23189974
Alignment:
Q  163 agtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagat 251  Q
    |||||||| ||||||||||||||||||||||| ||    |||||||||||||| || || |||||||||||||||||| || |||||||    
T  23189886 agtggctacatgtctcctgaatatgctatggaaggccttttctcagttaaatccgacgtctttagctttggagttcttctgttagagat 23189974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 23182509 - 23182597
Alignment:
Q  163 agtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagat 251  Q
    |||||||| ||||||||||||||||||||||| ||    |||||||||||||| || || || ||||||||||| ||| || |||||||    
T  23182509 agtggctacatgtctcctgaatatgctatggaaggccttttctcagttaaatccgacgtcttcagctttggagtgcttttgttagagat 23182597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 15805249 - 15805167
Alignment:
Q  160 tacagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgt 242  Q
    |||||||| || ||| |||| |||||||||||||  ||    || ||||| ||||| ||||||||||||||||||||||||||    
T  15805249 tacagtggatacatggctccagaatatgctatggctggcttattttcagtgaaatccgatgtttttagctttggagttcttgt 15805167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 15813045 - 15812999
Alignment:
Q  205 tcagttaaatcagatgtttttagctttggagttcttgtgctagagat 251  Q
    ||||| ||||| |||||||| |||||||||||||||||| |||||||    
T  15813045 tcagtgaaatccgatgttttcagctttggagttcttgtgttagagat 15812999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 15722401 - 15722337
Alignment:
Q  176 ctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttctt 240  Q
    |||| |||||||||||||  |||   || ||||||||||| ||||||| ||||||||||||||||    
T  15722401 ctccagaatatgctatggttggagtgttttcagttaaatccgatgtttatagctttggagttctt 15722337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 3103479 - 3103569
Alignment:
Q  162 cagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatc 252  Q
    |||||| |||||| |||| |||||||||||||| |||   || ||||| || ||||||||||| |||||||| |||||| |||||||||||    
T  3103479 cagtggatatatggctccagaatatgctatggaaggattgttttcagtaaagtcagatgttttcagctttggtgttcttttgctagagatc 3103569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 20294828 - 20294917
Alignment:
Q  162 cagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagat 251  Q
    ||||||||||||||||||||||||||| ||| | |||   || ||||  ||||||||||||||||||||||| ||| |  ||||||||||    
T  20294828 cagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagat 20294917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 20243801 - 20243871
Alignment:
Q  163 agtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttgg 233  Q
    |||||||| ||||||||||||||||| ||| | |||   || ||||  |||||||||||||||||||||||    
T  20243801 agtggctacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttgg 20243871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 47619488 - 47619564
Alignment:
Q  160 tacagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagt 236  Q
    |||||||| |||||||||||||||||||| |||   ||||| ||||| |  |||||||| |||||||| ||||||||    
T  47619488 tacagtggttatatgtctcctgaatatgcaatgcttggaaaattctctgaaaaatcagacgtttttagttttggagt 47619564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University