View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18505_low_20 (Length: 230)
Name: NF18505_low_20
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 34344892 - 34344700
Alignment:
| Q |
20 |
gatgctgtggagatgattcgagcacaattaggccttgttgcacctcatcatcatgttcactttctagtccttgatgtctcagatgctgattctattcaaa |
119 |
Q |
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| T |
34344892 |
gatgctgtggagagaattcgagcacaattaggccttgttgcacctcatcatcatgttcactttctagtccttgatgtctcagatgctgattctattaaaa |
34344793 |
T |
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| Q |
120 |
cctttgcatcctccttcaaagacaaatttggagccaccttggatattctcgtatgtattaattacctattacttgttcaattttaatttttac |
212 |
Q |
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| T |
34344792 |
cctttgcatcctccttcaaagacaaatttggagccaccttggatattctcgtatgtattaattacctattatttgttcaattttaatttttac |
34344700 |
T |
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