View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18505_low_3 (Length: 609)
Name: NF18505_low_3
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Original strand, 46505489 - 46506071
Alignment:
| Q |
19 |
aagagtatggatcaatatgcattaatattcttcagctttaatagcacaatctttgatgatgaattctaaaagccattatgtacccaaaaaatatattgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46505489 |
aagagtatggatcaatatgcattaatattcttcagctttaatagcacaatctttgatgatgaattctaaaagccattatgtacccaaaaaatatattgaa |
46505588 |
T |
|
| Q |
119 |
atgtaccaaaaaagaattctaagagccctttacactaagaataattctgtgtggtacaatcttgtgacattcatttgctcaatcttgcacgtgaagaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46505589 |
atgtaccaaaaaagaattctaagagccctttacactaaaaataattctgtgtggtacaatcttgtgacattcatttgctcaatcttgcacgtgaagaaga |
46505688 |
T |
|
| Q |
219 |
caatagaaatattagatgcaaatgcacatgttagagtaaacttggttttcatgcagtaggttattattagtacattaaatgtatagtgccttgttatgct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46505689 |
caatagaaatattagatgcaaatgcacatgttagagtaaacttgattttcatgcagtaggttattattagtacattaaatgtatagtgccttgttatgct |
46505788 |
T |
|
| Q |
319 |
cactgcaagctcaggaaacaatgttataagttataacacataaaccaaacaaaacaattccttcagaatgaattaaaggaaagttgatcaaatagagtgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
46505789 |
cactgcaagctcaggaaacaatgttataagttataacacataaaccaaacaaaacagttccttcagaatgaattgaaggaaagttgatcaaatatagtgt |
46505888 |
T |
|
| Q |
419 |
tatgattcaatatagcatttgaggaaacacacttggcataatattattggttgaaattgaatggacacatgtctggtgatcctaaaataaaggaaccttg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46505889 |
tatgattcaatatagcatttgaggaaacacacttggcataatattattagttgaaattgaatggacacatgtctggtgatcctaaaataaaggaaccttg |
46505988 |
T |
|
| Q |
519 |
gatgtgcataaatagttaaaggaggatcaatagtgggtatgaagaatattgatgaagtctctcctctcttcctttgctactcc |
601 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
46505989 |
gatgtgcataaatagtgaaaggaggatcaatagtgggtgtgaagaatattgatgaagtctctcctctcttccttgggtactcc |
46506071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 593
Target Start/End: Original strand, 531170 - 531270
Alignment:
| Q |
496 |
gatcctaaaataaaggaaccttgga-tgtgcata--aatagttaaaggaggatcaatagtgggtatgaagaatattgatgaagtctctcctctcttcctt |
592 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||| || || ||| || |||| ||| ||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
531170 |
gatcctaaaatcaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatgaagtctctcctctctccctt |
531269 |
T |
|
| Q |
593 |
t |
593 |
Q |
| |
|
| |
|
|
| T |
531270 |
t |
531270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 593
Target Start/End: Original strand, 564125 - 564225
Alignment:
| Q |
496 |
gatcctaaaataaaggaaccttgga-tgtgcata--aatagttaaaggaggatcaatagtgggtatgaagaatattgatgaagtctctcctctcttcctt |
592 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||| || || ||| || |||| ||| ||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
564125 |
gatcctaaaatcaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatgaagtctctcctctctccctt |
564224 |
T |
|
| Q |
593 |
t |
593 |
Q |
| |
|
| |
|
|
| T |
564225 |
t |
564225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 417 - 600
Target Start/End: Original strand, 5699923 - 5700107
Alignment:
| Q |
417 |
gttatgattcaatatagcatttgaggaaacacacttggcataatattattggttgaaattgaatggacacatgtctggtgatcctaaaataaaggaacct |
516 |
Q |
| |
|
|||||||||||| ||||||| | |||||| ||||||||||||| || ||||||| || | |||| |||| || || ||||||||||||| |||||| | |
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|
| T |
5699923 |
gttatgattcaaaatagcatattaggaaatacacttggcataacataattggtt-aaggtaaatgaacacgtgactagtgatcctaaaatcaaggaagtt |
5700021 |
T |
|
| Q |
517 |
t-ggatgtgcataaatagttaaaggaggatcaatagtgggtatgaagaatattga-tgaagtctctcctctcttcctttgctactc |
600 |
Q |
| |
|
| || ||||||||||||| || ||| ||||| || ||||||||||| | ||| ||||||||||||||||| |||||| ||||| |
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|
| T |
5700022 |
tgggctgtgcataaataggccaatgagaatcaacagaaggtatgaagaaaaatgattgaagtctctcctctctccctttggtactc |
5700107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 578
Target Start/End: Original strand, 31380499 - 31380662
Alignment:
| Q |
416 |
tgttatgattcaatatagcatttgaggaaacacacttggcataatattattgg--ttgaaattgaatggacacatgtctggtgatcctaaaataaaggaa |
513 |
Q |
| |
|
||||||||||||| |||||| || ||||| |||||| |||||| || ||||| |||| || ||||||||| || || | |||||||||| || ||| |
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|
| T |
31380499 |
tgttatgattcaaagtagcatatgtggaaatacacttagcataacataattggggttgatata-aatggacacgtggctaatcatcctaaaatcaatgaa |
31380597 |
T |
|
| Q |
514 |
ccttg-gatgtgcataaatagttaaaggaggatcaatagtgggtatgaagaatattgatgaagtct |
578 |
Q |
| |
|
||||| | |||||||||||||| ||| ||||||||||||| ||||||||||| | | ||||||||| |
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|
| T |
31380598 |
ccttgagttgtgcataaatagtgaaatgaggatcaatagt-ggtatgaagaaaaataatgaagtct |
31380662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 559 - 601
Target Start/End: Original strand, 13266901 - 13266943
Alignment:
| Q |
559 |
gaagaatattgatgaagtctctcctctcttcctttgctactcc |
601 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
13266901 |
gaagaatattggtgaagtctctcctctctccctttggtactcc |
13266943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 417 - 600
Target Start/End: Complemental strand, 32471378 - 32471190
Alignment:
| Q |
417 |
gttatgattcaatatagcatttgaggaaacacacttggcataatattattggttgaaattgaatggacacatgtctggtgatcctaaaataaaggaacct |
516 |
Q |
| |
|
|||||||||||| |||| || |||||||| || |||||||||||||||||||||| | |||||||| | | ||||||||||||| |||||| || |
|
|
| T |
32471378 |
gttatgattcaaaatagaatatgaggaaatacgcttggcataatattattggttg-aggcaaatggacatgtagttagtgatcctaaaatcaaggaagct |
32471280 |
T |
|
| Q |
517 |
tgga-tgtgcataaatagttaaaggaggatcaat-ag----tgggtatgaagaatattgatgaagtctctcctctcttcctttgctactc |
600 |
Q |
| |
|
|||| ||||||||||||| ||| || ||||| | || || ||||||||| |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
32471279 |
tggattgtgcataaatagagaaatgatgatcactgagggccgggttatgaagaaaattgatgaagtctctcctctctccctttggtactc |
32471190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 22601182 - 22601123
Alignment:
| Q |
288 |
gtacattaaatgtatagtgccttgttatgctcactgcaagctcaggaaacaatgttataa |
347 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| |||||| |
|
|
| T |
22601182 |
gtacattaaatgtatagtgccttgttctgcacactacaagctcgggaaacaatattataa |
22601123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 587
Target Start/End: Complemental strand, 29367543 - 29367372
Alignment:
| Q |
416 |
tgttatgattcaatatagcatttgaggaaacacacttggcataatattattggttgaaattgaatggacacatgtctggtgatcctaaaataaaggaacc |
515 |
Q |
| |
|
||||||||||||| ||| || |||||||| |||||| | ||||||| |||||||||| | ||||| || | || || |||||||||| || |||| |
|
|
| T |
29367543 |
tgttatgattcaaaataatatatgaggaaatacacttagtataatataattggttgaagta-aatgggtacgcggctagtaatcctaaaattaaagaact |
29367445 |
T |
|
| Q |
516 |
ttggatg-tgcataaatagttaaaggaggatcaatagtgggtatgaagaatattgatgaagtctctcctctct |
587 |
Q |
| |
|
|||| | | |||||||||| ||| || |||||| ||||||||||||||| | ||||||||||| || ||||| |
|
|
| T |
29367444 |
ttgggttatacataaatagtgaaatgatgatcaacagtgggtatgaagaaaagtgatgaagtctatcatctct |
29367372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 591
Target Start/End: Complemental strand, 32848113 - 32848016
Alignment:
| Q |
495 |
tgatcctaaaataaaggaaccttggat-gtgcataaatagttaaaggaggatcaatagtgggtatgaagaatattgatgaagtctctcctctcttcct |
591 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||||||||| ||| || |||||||| ||||||| ||||| ||||||||| |||||| ||| ||||| |
|
|
| T |
32848113 |
tgatcctaaaatcaaggaagtttggattgtgcataaatagagaaatgatgatcaataatgggtatcaagaaaattgatgaactctctcatcttttcct |
32848016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 494 - 600
Target Start/End: Complemental strand, 17011746 - 17011638
Alignment:
| Q |
494 |
gtgatcctaaaataaaggaaccttg-gatgtgcataaatagttaaag-gaggatcaatagtgggtatgaagaatattgatg-aagtctctcctctcttcc |
590 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||| ||| || |||||||||| ||||||||||| | ||||| ||||||||||||||| || |
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|
| T |
17011746 |
gtgatcctaaaatcaaggaaccttaagttgtgca-aaatagtgaaaaagatgatcaatagttggtatgaagaaaaatgatgcaagtctctcctctctccc |
17011648 |
T |
|
| Q |
591 |
tttgctactc |
600 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17011647 |
tttggtactc |
17011638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 494 - 600
Target Start/End: Original strand, 17545455 - 17545563
Alignment:
| Q |
494 |
gtgatcctaaaataaaggaaccttg-gatgtgcataaatagttaaag-gaggatcaatagtgggtatgaagaatattgatg-aagtctctcctctcttcc |
590 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||| ||| || |||||||||| ||||||||||| | ||||| ||||||||||||||| || |
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|
| T |
17545455 |
gtgatcctaaaatcaaggaaccttaagttgtgca-aaatagtgaaaaagatgatcaatagttggtatgaagaaaaatgatgcaagtctctcctctctccc |
17545553 |
T |
|
| Q |
591 |
tttgctactc |
600 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17545554 |
tttggtactc |
17545563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 6919323 - 6919379
Alignment:
| Q |
416 |
tgttatgattcaatatagcatttgaggaaacacacttggcataatattattggttga |
472 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||||||||||| || ||||||||| |
|
|
| T |
6919323 |
tgttatgattcaatatagcatatgggaaaatacacttggcataacataattggttga |
6919379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 28983386 - 28983442
Alignment:
| Q |
416 |
tgttatgattcaatatagcatttgaggaaacacacttggcataatattattggttga |
472 |
Q |
| |
|
|||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
28983386 |
tgttatgattcaatatgacatatgatgaagtacacttggcataatattattggttga |
28983442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 593
Target Start/End: Complemental strand, 15091946 - 15091896
Alignment:
| Q |
543 |
gatcaatagtgggtatgaagaatattgatgaagtctctcctctcttccttt |
593 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| ||| ||||| ||||| |
|
|
| T |
15091946 |
gatcaatagtggatatgaagaaaattgatgaagtcactcatctctcccttt |
15091896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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