View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18505_low_5 (Length: 541)
Name: NF18505_low_5
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 23806356 - 23806652
Alignment:
| Q |
1 |
aagatctgcttttataaaaatatccacacatgctccacaaaaagcacttcactgattatctcacgtttggcttacaacttttcaccaattgttcccatag |
100 |
Q |
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| T |
23806356 |
aagatctgcttttataaaaatatccacacatgctccacaaaaagcacttcactgattatctcacgtttggcttacaacttttcaccaattgttcccatag |
23806455 |
T |
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| Q |
101 |
tgatggtccataagctctctttattgcctttagatgggactttgtggtggaactgtcattgtataaaggaatccataacattatctatgtcaagaacatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
23806456 |
tgatggtccataagctctctttattgcctttagatgggactttgtggtggaactgtcattgtacagaggaatccataacattatctatgtcaagaacatt |
23806555 |
T |
|
| Q |
201 |
gttctctgaattttatcttttgttttttaaaatattgaagcacatgcattacacatattggaacaactttttgcatgtcacgtgatgtgcatatata |
297 |
Q |
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| T |
23806556 |
gttctctgaattttatcttttgttttttaaaatattgaagcacatgcattacacatattggaacaactttttgcatgtcacgtgatgtgcatatata |
23806652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 361 - 526
Target Start/End: Original strand, 23807308 - 23807473
Alignment:
| Q |
361 |
agatatctttagtgtatcttgcttgaagttagagatttcttgatacgaattttctactcgaactctatcacctcgaagacaatattttcattgaagacga |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23807308 |
agatatctttagtgtatcttgcttgaagttagagatttcttgatacaaattttctactcaaactctatcacctcgaagacaatattttcattgaagacga |
23807407 |
T |
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| Q |
461 |
tgctttttggaacttacagctgcattcatgaattgatcaaacaagaataaacaatgttgttattac |
526 |
Q |
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| T |
23807408 |
tgctttttgaaacttgcagctgcattcatgaattgatcaaacaagaataaacaatgttgttattac |
23807473 |
T |
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