View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18505_low_8 (Length: 431)
Name: NF18505_low_8
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 5176175 - 5175891
Alignment:
| Q |
13 |
aatattggtgtgtctcaatcatctgcatgttgagattgtagtcttgatgcatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacat |
112 |
Q |
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| T |
5176175 |
aatattggtgtgtctcaatcatctgcatgttgagattgtagtcttgatacatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacat |
5176076 |
T |
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| Q |
113 |
cgactcaaaacacactctaaatgtttcaaagtgttggtgttactacacaacatttagaccgtgagatagtcgttatttgtcaataaatgatcaaatattg |
212 |
Q |
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| T |
5176075 |
cgactcaaaacacactctaaatgtttcaaagtgttggtgttactacacaacatttaggccgtgagatagtcgttattcgtcaataaatgatcaaatattg |
5175976 |
T |
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| Q |
213 |
gagtcttcatttgcatcaaatgtagcatgaagggaacacgtgccatgattatcttgtcaagattggtgctagatccagcagtaac |
297 |
Q |
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| T |
5175975 |
gagtcttcaattgcatcaaatgttgcatgaagggaacacgtgccatgattatcttgtcaagattggtgctagatccagcagtaac |
5175891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 35 - 346
Target Start/End: Complemental strand, 5180440 - 5180130
Alignment:
| Q |
35 |
ctgcatgttgagattgtagtcttgatgcatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacatcgactcaaaaca--cactctaa |
132 |
Q |
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| T |
5180440 |
ctgcaagttgagattgtagccttgatgcatggcgttcgcatgtgttggaaagaaggttcgcgtaaaatcatgttacattgactagaaacatacactccaa |
5180341 |
T |
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| Q |
133 |
atgtttcaaagtgttggtgttactacacaacatttagaccgtgagatagtcgttatttgtcaataaatgatcaaatattggagtcttcatttgcatcaaa |
232 |
Q |
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| T |
5180340 |
ttgtttccaattgttggtgttactacacaacatttaagcaatgagataatcgttattcgtcaatatatgatcaaatattggagtcttcaactgcatcaaa |
5180241 |
T |
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| Q |
233 |
tgtagcatgaagggaacacgtgccatgattatcttgtcaagattggtgctagatccagcagtaacgagctcattgttataactgatccttcgaatgagct |
332 |
Q |
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| T |
5180240 |
cgttccatgaagtgaacatgtgccatgattttcttgtcaagattggtgctagaaccagc---aacaagttaattgttatgattgatcctccaaatgagct |
5180144 |
T |
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| Q |
333 |
ttgtttgcttctca |
346 |
Q |
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| T |
5180143 |
tcgtttgcttctca |
5180130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 5179956 - 5179887
Alignment:
| Q |
351 |
catgttagcctgctatcaaagaacgtgacgtacatttcatttggttattttgtttacattttacaaccat |
420 |
Q |
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| T |
5179956 |
catgttagcccactatcaaagaacatgacgtacatttcatttggttattttgtttacattttataaccat |
5179887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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