View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18505_low_9 (Length: 421)
Name: NF18505_low_9
Description: NF18505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18505_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 12584040 - 12584431
Alignment:
| Q |
14 |
aatctccactgaaacatagctatgaatttgagaaatggttgttccttattgctaaaaccacgcaaatctccaacaccatttgttcttgccacaaacccag |
113 |
Q |
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| T |
12584040 |
aatctccactgaaacatagctatgaatttgagaaatggttgttccttattgctaaaaccacgcaaatctccaaccccatttgttcttgccacaaacccaa |
12584139 |
T |
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| Q |
114 |
atcatgaaaaagccaaaaaccttaacgtttgtcctgtttcagaatcccatgttgttaaagtgttgagacaagaacatgatattgtttcatcacttgaata |
213 |
Q |
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| T |
12584140 |
atcctgaaaaagccaacagccttaacgtttgtcctgtttcagaatcccatgttgttaaagtgttgagacaagaacatgatattgtttcatcacttgaata |
12584239 |
T |
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| Q |
214 |
cttcaaatctttgtcaaattcaggtactttcaaaaacacccatttaacatacgaaactatgattgataagcttggtagaaacaatgaaatggatggtgtt |
313 |
Q |
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| T |
12584240 |
cttcaaatctttgtcaaattcaggtactttcaaacacacccatttaacatacgaaactatgattgataagcttggtagaaacaatgaaatggatggtgtt |
12584339 |
T |
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| Q |
314 |
tcatatcttttacagcaaatgaagttagaaaatgtaccatgttctcaagagttgtttcagtttgttatcaagtgttacaggagatcaaattt |
405 |
Q |
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| T |
12584340 |
tcgtatcttttacaacaaatgaagttagaaaatgtaccatgttctcaagagttgtttcagtttgttatcaagtgttataggagatcaaattt |
12584431 |
T |
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